7A58
NOE-only solution structure of the Iron-Sulfur protein PioC from Rhodopseudomonas palustris TIE-1
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 500 uM [U-15N] PioC | 90% H2O/10% D2O | 300 mM | 5.6 | 1 atm | 298 | Bruker AVANCE 500 |
2 | 3D HNCO | 500 uM [U-13C; U-15N] PioC | 90% H2O/10% D2O | 300 mM | 5.6 | 1 atm | 298 | Bruker AVANCE 700 |
3 | 3D HNCACB | 500 uM [U-13C; U-15N] PioC | 90% H2O/10% D2O | 300 mM | 5.6 | 1 atm | 298 | Bruker AVANCE 700 |
4 | 3D 1H-15N NOESY | 500 uM [U-13C; U-15N] PioC | 90% H2O/10% D2O | 300 mM | 5.6 | 1 atm | 298 | Bruker AVANCE 950 |
5 | 3D HN(COCA)CB | 500 uM [U-13C; U-15N] PioC | 90% H2O/10% D2O | 300 mM | 5.6 | 1 atm | 298 | Bruker AVANCE 700 |
7 | 3D HNCACO | 500 uM [U-13C; U-15N] PioC | 90% H2O/10% D2O | 300 mM | 5.6 | 1 atm | 298 | Bruker AVANCE 700 |
6 | 3D 1H-13C NOESY aliphatic | 500 uM [U-13C; U-15N] PioC | 90% H2O/10% D2O | 300 mM | 5.6 | 1 atm | 298 | Bruker AVANCE III 900 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE III | 600 |
2 | Bruker | AVANCE | 400 |
5 | Bruker | AVANCE III | 900 |
4 | Bruker | AVANCE | 500 |
3 | Bruker | AVANCE | 950 |
6 | Bruker | AVANCE | 700 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics | CYANA | |
molecular dynamics | Amber |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 2000 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | Amber | 16 | Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman |
2 | structure calculation | CYANA | 2.1 | Guntert, Mumenthaler and Wuthrich |
3 | chemical shift assignment | CARA | Keller and Wuthrich | |
4 | processing | TopSpin | 3.6 | Bruker Biospin |
5 | refinement | PROCHECK / PROCHECK-NMR | Laskowski, MacArthur, Smith, Jones, Hutchinson, Morris, Moss and Thornton |