6ZJ4

apo-Trehalose transferase (apo-TreT) from Thermoproteus uzoniensis

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION	6.5	292	Bis-Tris Propane, PEG 3350, potassium thiocyanate, PEG 400

Crystal Properties
Matthews coefficient	Solvent content
2.61	52.81

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 61.519	α = 90
b = 68.776	β = 90
c = 112.2	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M		2019-04-26	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1)	0.976250	PETRA III, EMBL c/o DESY	P13 (MX1)

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.1	68.78	96.8	0.065	0.084	0.053	0.997	8.5	3.6		27351

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.1	2.16	93.6		0.73	0.98	0.648	0.45		2.9

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	2x6q	2.1	58.705	27320	1336	95.88	0.197	0.208	0.255	47.711

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
1.979			-1.053		-0.926

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	31.471
r_dihedral_angle_4_deg	20.026
r_dihedral_angle_3_deg	14.491
r_lrange_it	8.14
r_lrange_other	8.132
r_dihedral_angle_1_deg	6.479
r_scangle_it	6.254
r_scangle_other	6.221
r_mcangle_it	5.098
r_mcangle_other	5.097
r_scbond_it	4.087
r_scbond_other	4.047
r_mcbond_it	3.525
r_mcbond_other	3.518
r_angle_refined_deg	1.446
r_angle_other_deg	1.242
r_nbd_refined	0.198
r_symmetry_nbd_other	0.19
r_nbd_other	0.165
r_symmetry_xyhbond_nbd_refined	0.165
r_xyhbond_nbd_refined	0.162
r_nbtor_refined	0.16
r_symmetry_nbd_refined	0.128
r_symmetry_nbtor_other	0.076
r_chiral_restr	0.067
r_symmetry_xyhbond_nbd_other	0.059
r_bond_refined_d	0.007
r_gen_planes_refined	0.006
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	3185
Nucleic Acid Atoms
Solvent Atoms	107
Heterogen Atoms	6

Software

Software
Software Name	Purpose
REFMAC	refinement
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
MOLREP	phasing