6YZ3

PqsR (MvfR) in complex with antagonist 19

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	5.9	293.15	100 mM Sodium citrate, 0.2 M Ammonium Acetate and 3% MPD

Crystal Properties
Matthews coefficient	Solvent content
4.508939	72.7378

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 119.318	α = 90
b = 119.318	β = 90
c = 114.758	γ = 120

Symmetry
Space Group	P 65 2 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER X 16M		2019-05-02	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I04	0.9795	Diamond	I04

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	3	59.73	100	0.999	17.1	19.2		10169

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	3	3.18			1.677	0.932	1.7

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	4JVC, 6Q7W	3	59.73	10138	428	99.961	0.196	0.1935	0.2551	127.924

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
4.516	2.258		4.516		-14.651

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	30.598
r_lrange_it	23.198
r_lrange_other	23.196
r_scangle_it	17.473
r_scangle_other	17.466
r_dihedral_angle_3_deg	17.329
r_mcangle_it	15.287
r_mcangle_other	15.249
r_dihedral_angle_4_deg	14.845
r_scbond_it	12.393
r_scbond_other	12.388
r_mcbond_it	11.582
r_mcbond_other	11.488
r_dihedral_angle_1_deg	7.042
r_angle_refined_deg	1.343
r_angle_other_deg	1.333
r_symmetry_nbd_refined	0.233
r_nbd_other	0.218
r_nbd_refined	0.208
r_symmetry_nbd_other	0.196
r_symmetry_xyhbond_nbd_refined	0.188
r_nbtor_refined	0.173
r_xyhbond_nbd_refined	0.164
r_symmetry_nbtor_other	0.078
r_chiral_restr	0.055
r_bond_refined_d	0.008
r_gen_planes_refined	0.005
r_gen_planes_other	0.002
r_bond_other_d	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1598
Nucleic Acid Atoms
Solvent Atoms	8
Heterogen Atoms	28

Software

Software
Software Name	Purpose
REFMAC	refinement
xia2	data reduction
Aimless	data scaling
PHASER	phasing