6YSH

Lamin A 1-70 coil1A dimer stabilized by C-terminal capping


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP62980.1M NaH2PO4 H2O,0.1M KH2PO4,2.0M NaCl,0.1M Mes H20 pH 6
Crystal Properties
Matthews coefficientSolvent content
3.9168.58

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 108.847α = 90
b = 108.847β = 90
c = 130.466γ = 90
Symmetry
Space GroupI 41 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 16M2019-12-10MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONPETRA III, EMBL c/o DESY BEAMLINE P14 (MX2)0.97631PETRA III, EMBL c/o DESYP14 (MX2)

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.8383.5899.90.2010.2050.040.99911.526.4966568.697
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.832.88992.512.5580.4880.8681.727.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT6YF52.8383.58915849699.810.239720.237470.28131RANDOM110.135
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-8.1-8.116.21
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.526
r_dihedral_angle_4_deg25.033
r_dihedral_angle_3_deg18.705
r_scangle_other16.827
r_mcangle_it12.417
r_mcangle_other12.41
r_scbond_other10.672
r_scbond_it10.662
r_mcbond_other8.645
r_mcbond_it8.644
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.526
r_dihedral_angle_4_deg25.033
r_dihedral_angle_3_deg18.705
r_scangle_other16.827
r_mcangle_it12.417
r_mcangle_other12.41
r_scbond_other10.672
r_scbond_it10.662
r_mcbond_other8.645
r_mcbond_it8.644
r_dihedral_angle_1_deg3.687
r_angle_refined_deg1.909
r_angle_other_deg1.505
r_chiral_restr0.106
r_bond_refined_d0.018
r_gen_planes_refined0.007
r_bond_other_d0.003
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1360
Nucleic Acid Atoms
Solvent Atoms22
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
MOLREPphasing