6X7A

Crystal structure of acetyltransferase Eis from Mycobacterium tuberculosis in complex with inhibitor SGT572


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP2950.1 M Tris-HCl pH 8.5, 13% PEG 8000 and 0.4 M (NH4)2SO4, 5 mM kanamycin, 4 mM CoA. Kanamycin, CoA and (NH4)2SO4 were replaced by 0.5 mM inhibitor on soaking.
Crystal Properties
Matthews coefficientSolvent content
4.2370.93

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 175.108α = 90
b = 175.108β = 90
c = 123.74γ = 120
Symmetry
Space GroupH 3 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 16M2018-04-11MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 22-ID1.00APS22-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.085099.40.0912.26.443424
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.082.120.770.85

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE6X102.0840.00343359213899.2580.1720.17060.19231.775
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.313-0.656-1.3134.259
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg26.019
r_dihedral_angle_4_deg16.906
r_dihedral_angle_3_deg14.291
r_dihedral_angle_1_deg6.789
r_lrange_it5.566
r_lrange_other5.287
r_scangle_it2.803
r_scangle_other2.802
r_mcangle_it2.405
r_mcangle_other2.405
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg26.019
r_dihedral_angle_4_deg16.906
r_dihedral_angle_3_deg14.291
r_dihedral_angle_1_deg6.789
r_lrange_it5.566
r_lrange_other5.287
r_scangle_it2.803
r_scangle_other2.802
r_mcangle_it2.405
r_mcangle_other2.405
r_scbond_it1.651
r_scbond_other1.651
r_mcbond_it1.386
r_mcbond_other1.384
r_angle_refined_deg1.25
r_angle_other_deg1.152
r_nbd_other0.184
r_symmetry_nbd_other0.183
r_nbd_refined0.182
r_nbtor_refined0.153
r_symmetry_nbd_refined0.151
r_symmetry_xyhbond_nbd_refined0.148
r_xyhbond_nbd_refined0.141
r_symmetry_nbtor_other0.077
r_chiral_restr0.052
r_gen_planes_refined0.004
r_bond_refined_d0.003
r_bond_other_d0.003
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3028
Nucleic Acid Atoms
Solvent Atoms347
Heterogen Atoms78

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing