6WKW
EM structure of CtBP2 with a minimal dehydrogenase domain of CtBP2
ELECTRON MICROSCOPY
Refinement
RMS Deviations | |
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Key | Refinement Restraint Deviation |
f_dihedral_angle_d | 5.258 |
f_angle_d | 0.898 |
f_chiral_restr | 0.054 |
f_bond_d | 0.011 |
f_plane_restr | 0.005 |
Sample |
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Complex of CtBP2 with four NADH molecules |
Specimen Preparation | |
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Sample Aggregation State | PARTICLE |
Vitrification Instrument | FEI VITROBOT MARK IV |
Cryogen Name | ETHANE |
Sample Vitrification Details | Blotting time: 4s Blotting force: 8 Wait time: 0 |
3D Reconstruction | |
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Reconstruction Method | SINGLE PARTICLE |
Number of Particles | 112919 |
Reported Resolution (Å) | 3.6 |
Resolution Method | FSC 0.143 CUT-OFF |
Other Details | |
Refinement Type | |
Symmetry Type | POINT |
Point Symmetry | D2 |
Map-Model Fitting and Refinement | |||||
---|---|---|---|---|---|
Id | 1 (4U6Q) | ||||
Refinement Space | |||||
Refinement Protocol | FLEXIBLE FIT | ||||
Refinement Target | |||||
Overall B Value | |||||
Fitting Procedure | |||||
Details |
Data Acquisition | |||||||||
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Detector Type | GATAN K3 (6k x 4k) | ||||||||
Electron Dose (electrons/Å**2) | 37 |
Imaging Experiment | 1 |
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Date of Experiment | |
Temperature (Kelvin) | |
Microscope Model | FEI TALOS ARCTICA |
Minimum Defocus (nm) | |
Maximum Defocus (nm) | |
Minimum Tilt Angle (degrees) | |
Maximum Tilt Angle (degrees) | |
Nominal CS | |
Imaging Mode | BRIGHT FIELD |
Specimen Holder Model | FEI TITAN KRIOS AUTOGRID HOLDER |
Nominal Magnification | 50000 |
Calibrated Magnification | |
Source | FIELD EMISSION GUN |
Acceleration Voltage (kV) | 200 |
Imaging Details |
EM Software | ||
---|---|---|
Task | Software Package | Version |
PARTICLE SELECTION | cisTEM | |
IMAGE ACQUISITION | SerialEM | |
CTF CORRECTION | cisTEM | |
MODEL FITTING | UCSF Chimera | |
MODEL FITTING | PyMOL | |
INITIAL EULER ASSIGNMENT | cisTEM | |
FINAL EULER ASSIGNMENT | RELION | 3.0.2 |
CLASSIFICATION | RSRef | 3.0.2 |
RECONSTRUCTION | RELION | 3.0.2 |
MODEL REFINEMENT | Coot |
Image Processing | ||||
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CTF Correction Type | CTF Correction Details | Number of Particles Selected | Particle Selection Details | |
PHASE FLIPPING AND AMPLITUDE CORRECTION | 485473 | Particles were automatically picked in cisTEM. |