X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP52900.1 M sodium citrate tribasic dihydrate pH 5, 25 % (w/v) PEG3350
Crystal Properties
Matthews coefficientSolvent content
2.3948.54

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 45.415α = 90
b = 53.558β = 90
c = 96.258γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 16M2017-04-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAUSTRALIAN SYNCHROTRON BEAMLINE MX20.9537, 1.456Australian SynchrotronMX2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.848.1399.40.0530.0440.99811.54.222425
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.81.830.9850.7870.456

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.848.1321264111299.120.221450.219270.26307RANDOM37.716
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.210.21-1.42
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.567
r_dihedral_angle_4_deg17.053
r_dihedral_angle_3_deg15.216
r_long_range_B_refined7.735
r_long_range_B_other7.643
r_scangle_other6.219
r_dihedral_angle_1_deg5.263
r_scbond_it4.22
r_scbond_other4.213
r_mcangle_other3.365
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.567
r_dihedral_angle_4_deg17.053
r_dihedral_angle_3_deg15.216
r_long_range_B_refined7.735
r_long_range_B_other7.643
r_scangle_other6.219
r_dihedral_angle_1_deg5.263
r_scbond_it4.22
r_scbond_other4.213
r_mcangle_other3.365
r_mcangle_it3.363
r_mcbond_it2.637
r_mcbond_other2.629
r_angle_refined_deg1.657
r_angle_other_deg1.259
r_chiral_restr0.108
r_bond_refined_d0.017
r_gen_planes_refined0.008
r_bond_other_d0.002
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1679
Nucleic Acid Atoms
Solvent Atoms117
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
SHELXDEphasing