6U95
Adeno-associated virus strain AAVhu.37 capsid icosahedral structure
ELECTRON MICROSCOPY
Refinement
| RMS Deviations | |
|---|---|
| Key | Refinement Restraint Deviation |
| f_dihedral_angle_d | 2.328 |
| f_angle_d | 0.535 |
| f_chiral_restr | 0.042 |
| f_bond_d | 0.006 |
| f_plane_restr | 0.003 |
| Sample |
|---|
| Adeno-associated virus |
| Specimen Preparation | |
|---|---|
| Sample Aggregation State | PARTICLE |
| Vitrification Instrument | LEICA EM GP |
| Cryogen Name | ETHANE |
| Sample Vitrification Details | Whatman #1 filter paper, 4.5s blot. 3.5 microliters specimen applied. |
| 3D Reconstruction | |
|---|---|
| Reconstruction Method | SINGLE PARTICLE |
| Number of Particles | 41850 |
| Reported Resolution (Å) | 2.56 |
| Resolution Method | FSC 0.143 CUT-OFF |
| Other Details | 2.8 unmasked, 2.53 masked, 2.56 with noise-substitution ("true FSC"). 2.7 3-bit unmasked. |
| Refinement Type | |
| Symmetry Type | POINT |
| Point Symmetry | I |
| Map-Model Fitting and Refinement | |||||
|---|---|---|---|---|---|
| Id | 1 (2QA0) | ||||
| Refinement Space | |||||
| Refinement Protocol | FLEXIBLE FIT | ||||
| Refinement Target | |||||
| Overall B Value | |||||
| Fitting Procedure | |||||
| Details | |||||
| Data Acquisition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Detector Type | GATAN K2 SUMMIT (4k x 4k) | ||||||||
| Electron Dose (electrons/Å**2) | 1.31 | ||||||||
| Imaging Experiment | 1 |
|---|---|
| Date of Experiment | |
| Temperature (Kelvin) | |
| Microscope Model | FEI TALOS ARCTICA |
| Minimum Defocus (nm) | |
| Maximum Defocus (nm) | |
| Minimum Tilt Angle (degrees) | |
| Maximum Tilt Angle (degrees) | |
| Nominal CS | 2.7 |
| Imaging Mode | BRIGHT FIELD |
| Specimen Holder Model | FEI TITAN KRIOS AUTOGRID HOLDER |
| Nominal Magnification | 130000 |
| Calibrated Magnification | |
| Source | FIELD EMISSION GUN |
| Acceleration Voltage (kV) | 200 |
| Imaging Details |
| EM Software | ||
|---|---|---|
| Task | Software Package | Version |
| IMAGE ACQUISITION | EPU | 1.9.1.16REL |
| CTF CORRECTION | cryoSPARC | 2.9.0 |
| MODEL FITTING | Coot | 0.8.9.2 |
| INITIAL EULER ASSIGNMENT | cryoSPARC | 2.9.0 |
| FINAL EULER ASSIGNMENT | cryoSPARC | 2.9.0 |
| CLASSIFICATION | cryoSPARC | 2.9.0 |
| RECONSTRUCTION | cryoSPARC | 2.9.0 |
| MODEL REFINEMENT | PHENIX | dev-3366 |
| Image Processing | ||||
|---|---|---|---|---|
| CTF Correction Type | CTF Correction Details | Number of Particles Selected | Particle Selection Details | |
| PHASE FLIPPING AND AMPLITUDE CORRECTION | 53545 | |||
