6TW6

Plasmodium vivax N-myristoyltransferase with bound indazole inhibitor IMP-923

X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	6	293	0.2 M AS, 25% PEG 3350, 0.1 M Bis-Tris

Crystal Properties
Matthews coefficient	Solvent content
2.22	44.5

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 57.608	α = 90
b = 121.785	β = 90
c = 178.831	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 2M		2013-11-30	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I02	0.9795	Diamond	I02

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.7	50.381	100	0.125	9.8	6.6		139024

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.7	1.73	100		0.817	2	6.7

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	FOURIER SYNTHESIS	FREE R-VALUE	1.7	50.381	138925	6960	99.94	0.17	0.1682	0.2085	16.734

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.138			-0.038		0.176

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	36.139
r_dihedral_angle_4_deg	14.84
r_dihedral_angle_3_deg	14.344
r_dihedral_angle_1_deg	6.289
r_lrange_it	4.578
r_scangle_it	2.742
r_mcangle_it	2.022
r_scbond_it	1.856
r_angle_refined_deg	1.636
r_mcbond_it	1.312

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	36.139
r_dihedral_angle_4_deg	14.84
r_dihedral_angle_3_deg	14.344
r_dihedral_angle_1_deg	6.289
r_lrange_it	4.578
r_scangle_it	2.742
r_mcangle_it	2.022
r_scbond_it	1.856
r_angle_refined_deg	1.636
r_mcbond_it	1.312
r_nbtor_refined	0.315
r_nbd_refined	0.212
r_symmetry_nbd_refined	0.189
r_symmetry_xyhbond_nbd_refined	0.153
r_xyhbond_nbd_refined	0.133
r_chiral_restr	0.118
r_bond_refined_d	0.011
r_gen_planes_refined	0.01

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	9400
Nucleic Acid Atoms
Solvent Atoms	1615
Heterogen Atoms	303

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
SCALA	data scaling
REFMAC	phasing

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.