6TVU

Structure of native gp41 derived peptide fusion inhibitor

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION	5.6	293.15	PEG 4000, 2-Propanol, Citrate

Crystal Properties
Matthews coefficient	Solvent content
2.49	50.51

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 44.963	α = 90
b = 44.963	β = 90
c = 209.01	γ = 120

Symmetry
Space Group	H 3 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS3 S 6M		2019-11-06	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	BESSY BEAMLINE 14.1	0.918400	BESSY	14.1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.25	38.3	100	0.083	0.997	7.5	14.5		23184

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.25	1.27			0.396

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	AB INITIO PHASING	FREE R-VALUE	1.25	38.28	23183	1114	99.97	0.164	0.162	0.2104	21.651

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.862	0.431		0.862		-2.795

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	39.079
r_dihedral_angle_4_deg	19.075
r_dihedral_angle_3_deg	13.675
r_lrange_it	5.646
r_scangle_it	5.36
r_lrange_other	5.359
r_scangle_other	5.355
r_rigid_bond_restr	5.353
r_scbond_it	4.315
r_scbond_other	4.312
r_dihedral_angle_1_deg	3.74
r_mcangle_other	3.339
r_mcangle_it	3.313
r_mcbond_it	2.548
r_mcbond_other	2.547
r_angle_refined_deg	1.732
r_angle_other_deg	1.589
r_nbd_refined	0.332
r_symmetry_nbd_other	0.24
r_xyhbond_nbd_refined	0.214
r_nbd_other	0.194
r_symmetry_nbd_refined	0.192
r_nbtor_refined	0.175
r_symmetry_xyhbond_nbd_refined	0.118
r_chiral_restr	0.092
r_symmetry_nbtor_other	0.081
r_bond_refined_d	0.012
r_gen_planes_refined	0.009
r_gen_planes_other	0.003
r_bond_other_d	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	564
Nucleic Acid Atoms
Solvent Atoms	87
Heterogen Atoms	12

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
ACORN	phasing