6TKQ

Tankyrase 2 in complex with an inhibitor (OM-2700)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP295.157.5-25% PEG 6000, Bicine pH=9.0
Crystal Properties
Matthews coefficientSolvent content
2.2144.22

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 42.12α = 90
b = 76.84β = 90
c = 148.8γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2017-11-27MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID23-10.97625ESRFID23-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.55099.80.9938.376.47117374
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.52.560.895

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE5NOB2.541.7071737486999.8050.2020.19910.251632.103
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.2912.49-2.782
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.983
r_dihedral_angle_4_deg16.39
r_dihedral_angle_3_deg15.661
r_dihedral_angle_1_deg7.069
r_lrange_it6.97
r_lrange_other6.969
r_scangle_it4.628
r_scangle_other4.627
r_mcangle_it4.095
r_mcangle_other4.094
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.983
r_dihedral_angle_4_deg16.39
r_dihedral_angle_3_deg15.661
r_dihedral_angle_1_deg7.069
r_lrange_it6.97
r_lrange_other6.969
r_scangle_it4.628
r_scangle_other4.627
r_mcangle_it4.095
r_mcangle_other4.094
r_scbond_it2.803
r_scbond_other2.802
r_mcbond_it2.466
r_mcbond_other2.466
r_angle_refined_deg1.511
r_angle_other_deg1.29
r_chiral_restr_other0.935
r_nbd_refined0.191
r_symmetry_nbd_other0.179
r_symmetry_nbd_refined0.175
r_nbtor_refined0.166
r_xyhbond_nbd_refined0.152
r_nbd_other0.147
r_symmetry_xyhbond_nbd_refined0.109
r_ncsr_local_group_10.095
r_symmetry_nbtor_other0.074
r_chiral_restr0.062
r_bond_refined_d0.008
r_metal_ion_refined0.007
r_gen_planes_refined0.006
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3278
Nucleic Acid Atoms
Solvent Atoms208
Heterogen Atoms76

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing