6SWP

C-TERMINAL BROMODOMAIN OF HUMAN BRD2 WITH iBET-BD2 (GSK046)

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP		298	30% PEG 300, 0.1M MES buffer pH6.

Crystal Properties
Matthews coefficient	Solvent content
2.25	45.44

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 72.201	α = 90
b = 52.39	β = 90
c = 32.024	γ = 90

Symmetry
Space Group	P 21 21 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	RIGAKU		2015-04-28	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	ROTATING ANODE	RIGAKU FR-E+ SUPERBRIGHT	1.54178

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.6	27.32	93.4	0.998	43.4	2.8		15434

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.6	1.69			0.974	15.7

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	FOURIER SYNTHESIS	FREE R-VALUE	1.604	27.32	15353	746	92.812	0.156	0.1542	0.1932	16.303

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.371			-0.056		0.427

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	29.987
r_dihedral_angle_4_deg	22.687
r_dihedral_angle_3_deg	12.406
r_lrange_it	5.716
r_lrange_other	5.714
r_dihedral_angle_1_deg	4.586
r_scangle_it	2.166
r_scangle_other	2.165
r_mcangle_other	1.711
r_mcangle_it	1.705
r_scbond_it	1.26
r_scbond_other	1.259
r_angle_other_deg	1.256
r_angle_refined_deg	1.183
r_mcbond_it	1.001
r_mcbond_other	0.954
r_nbd_refined	0.195
r_nbd_other	0.178
r_nbtor_refined	0.166
r_symmetry_nbd_other	0.164
r_symmetry_nbd_refined	0.113
r_xyhbond_nbd_refined	0.1
r_symmetry_xyhbond_nbd_refined	0.098
r_symmetry_nbtor_other	0.078
r_chiral_restr	0.064
r_gen_planes_refined	0.005
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	923
Nucleic Acid Atoms
Solvent Atoms	221
Heterogen Atoms	38

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling