Experiment: 6SP4

X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP		277	ammonium acetate

Crystal Properties
Matthews coefficient	Solvent content
2.62	53.15

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 112.452	α = 90
b = 91.875	β = 119.89
c = 112.313	γ = 90

Symmetry
Space Group	P 1 21 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER X 16M		2015-10-14	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SLS BEAMLINE X06SA	1.00000	SLS	X06SA

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.59	47.99	97	0.083	10.8	2.9		59516

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.6	2.805	97.8		0.431	2.69	3

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	NONE	2.59	47.99	58621	894	96.58	0.1757	0.1749	0.2247	RANDOM	63.709

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-52.87		5.56	90.09		-37.22

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	33.635
r_dihedral_angle_3_deg	15.547
r_dihedral_angle_4_deg	13.106
r_dihedral_angle_1_deg	6.264
r_angle_refined_deg	1.256
r_angle_other_deg	0.949
r_chiral_restr	0.075
r_bond_refined_d	0.008
r_bond_other_d	0.005
r_gen_planes_refined	0.004

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	33.635
r_dihedral_angle_3_deg	15.547
r_dihedral_angle_4_deg	13.106
r_dihedral_angle_1_deg	6.264
r_angle_refined_deg	1.256
r_angle_other_deg	0.949
r_chiral_restr	0.075
r_bond_refined_d	0.008
r_bond_other_d	0.005
r_gen_planes_refined	0.004
r_gen_planes_other	0.002

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	13101
Nucleic Acid Atoms
Solvent Atoms	220
Heterogen Atoms	210

Software

Software
Software Name	Purpose
XSCALE	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction
XDS	data reduction
MOLREP	phasing

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.