6SC2

Structure of the dynein-2 complex; IFT-train bound model

ELECTRON MICROSCOPY

Sample
Dynein-2 complex

Specimen Preparation
Sample Aggregation State	PARTICLE
Vitrification Instrument	FEI VITROBOT MARK IV
Cryogen Name	ETHANE
Sample Vitrification Details

3D Reconstruction
Reconstruction Method	SINGLE PARTICLE
Number of Particles	57265
Reported Resolution (Å)	3.9
Resolution Method	FSC 0.143 CUT-OFF
Other Details	Above values for the motor domain map (EMD-4917). For the tail domain map (EMD-4918), number of particles used was 68623, resolution was 4.5 A using t ...	Above values for the motor domain map (EMD-4917). For the tail domain map (EMD-4918), number of particles used was 68623, resolution was 4.5 A using the FSC 0.143 cut-off, even/odd maps refined totally independent (gold standard), C1 symmetry.
Refinement Type
Symmetry Type	POINT
Point Symmetry	C2

Map-Model Fitting and Refinement
Id	1
Refinement Space
Refinement Protocol	BACKBONE TRACE
Refinement Target
Overall B Value
Fitting Procedure
Details	EMD entries 4917 and 4918 (motor and tail domain reconstructions of human dynein-2 complex) were docked into a subtomogram average of IFT complex B an ...	EMD entries 4917 and 4918 (motor and tail domain reconstructions of human dynein-2 complex) were docked into a subtomogram average of IFT complex B and inhibited dynein-1b in anterograde IFT trains from C. reinhardtii cilia (EMD-4303) using Chimera's 'Fit in Map' command. The two DHC2 bundles connecting the tail and motor domain were modelled using SWISS-MODEL and RaptorX Contact (deposition as UNK).

Data Acquisition
Detector Type	GATAN K2 QUANTUM (4k x 4k)
Electron Dose (electrons/Å**2)	49.6

Imaging Experiment	1
Date of Experiment
Temperature (Kelvin)
Microscope Model	FEI TITAN KRIOS
Minimum Defocus (nm)	1000
Maximum Defocus (nm)	3500
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS	2.7
Imaging Mode	BRIGHT FIELD
Specimen Holder Model	FEI TITAN KRIOS AUTOGRID HOLDER
Nominal Magnification	105000
Calibrated Magnification
Source	FIELD EMISSION GUN
Acceleration Voltage (kV)	300
Imaging Details

EM Software
Task	Software Package	Version
IMAGE ACQUISITION	EPU
CTF CORRECTION	Gctf
CTF CORRECTION	RELION	2.1
INITIAL EULER ASSIGNMENT	RELION	2.1
FINAL EULER ASSIGNMENT	RELION	2.1
RECONSTRUCTION	RELION	2.1

Image Processing
CTF Correction Type	CTF Correction Details	Number of Particles Selected	Particle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.