6S7I

Arbitrium receptor from a Bacillus subtilis Katmira33 phage


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP294Litium sulphate, Hepes pH7, polivinilpirrolidone
Crystal Properties
Matthews coefficientSolvent content
359.2

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 77.583α = 90
b = 98.303β = 90
c = 144.348γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 S 6M2019-04-04MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALBA BEAMLINE XALOC0.9795ALBAXALOC

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.4144.410013.512.643841
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.42.53

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT6HP32.481.2543780220999.630.23590.23410.2695RANDOM60.9641
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-2.714.62-1.9
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg44.079
r_dihedral_angle_4_deg27.94
r_dihedral_angle_3_deg21.045
r_dihedral_angle_1_deg5.449
r_mcangle_it4.361
r_angle_other_deg3.883
r_mcbond_it2.846
r_mcbond_other2.846
r_angle_refined_deg1.734
r_chiral_restr0.144
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg44.079
r_dihedral_angle_4_deg27.94
r_dihedral_angle_3_deg21.045
r_dihedral_angle_1_deg5.449
r_mcangle_it4.361
r_angle_other_deg3.883
r_mcbond_it2.846
r_mcbond_other2.846
r_angle_refined_deg1.734
r_chiral_restr0.144
r_bond_refined_d0.014
r_gen_planes_other0.008
r_gen_planes_refined0.006
r_bond_other_d
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6361
Nucleic Acid Atoms
Solvent Atoms68
Heterogen Atoms20

Software

Software
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
XDSdata reduction
SCALAdata scaling
MOLREPphasing