6QXC

NMR structure of peptide 8, characterized by a trans-4-cyclohexyl-Pro, with a dramatic reduction in activity on E. coli ATCC and lost effect on P. aeruginosa.


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
11D 1H200 mM [U-100% 2H] SDS, 10 % v/v [U-99% 2H] D2O, 2 mM peptide, 90 % v/v H2O90% H2O/10% D2O0 mM5.01 atm298Varian INOVA 700
22D 1H-1H NOESY200 mM [U-100% 2H] SDS, 10 % v/v [U-99% 2H] D2O, 2 mM peptide, 90 % v/v H2O90% H2O/10% D2O0 mM5.01 atm298Varian INOVA 700
32D 1H-1H TOCSY200 mM [U-100% 2H] SDS, 10 % v/v [U-99% 2H] D2O, 2 mM peptide, 90 % v/v H2O90% H2O/10% D2O0 mM5.01 atm298Varian INOVA 700
42D DQF-COSY200 mM [U-100% 2H] SDS, 10 % v/v [U-99% 2H] D2O, 2 mM peptide, 90 % v/v H2O90% H2O/10% D2O0 mM5.01 atm298Varian INOVA 700
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianINOVA700
NMR Refinement
MethodDetailsSoftware
simulated annealingCYANA
NMR Ensemble Information
Conformer Selection Criteriastructures with the least restraint violations
Conformers Calculated Total Number200
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1refinementCYANAGuntert P.
2structure calculationCYANAGuntert, Mumenthaler and Wuthrich
3chemical shift assignmentCARAKeller and Wuthrich
4peak pickingCARAKeller and Wuthrich
5processingNMR