6QFP
Solution NMR ensemble for MlbQ at 298K compiled using the CoMAND method
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 3D-CNH NOESY | 0.5 mM [U-99% 13C; U-99% 15N] MlbQ, 20 mM TRIS, 250 mM sodium chloride | 90% H2O/10% D2O | 240 mM | 8.0 | ambient atm | 298 | Bruker AvanceIII 800 |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AvanceIII | 800 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| R-factor based MD frame picking | frames picked from unrestained MD simulations based on overall CNH-NOESY based R-factor | CoMAND |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | CNH-NOESY based R-factor |
| Conformers Calculated Total Number | 10000 |
| Conformers Submitted Total Number | 10 |
| Representative Model | 1 (closest to the average) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | collection | TopSpin | Bruker Biospin | |
| 2 | chemical shift assignment | Sparky | Goddard | |
| 5 | structure calculation | Shine | Riss & Coles | |
| 3 | structure calculation | NAMD | 2.12 | University of Illinois |
| 4 | refinement | NAMD | 2.12 | University of Illinois |
| 6 | refinement | CoMAND | in house | |
