6Q2T

Human sterol 14a-demethylase (CYP51) in complex with the functionally irreversible inhibitor (R)-N-(1-(3-chloro-4'-fluoro-[1,1'-biphenyl]-4-yl)-2-(1H-imidazol-1-yl)ethyl)-4-(5-(3-fluoro-5-(5-fluoropyrimidin-4-yl)phenyl)-1,3,4-oxadiazol-2-yl)benzamide


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.428915 mM sodium cholate, 8% PEG3350, 0.2 M potassium formate, pH 7.4
Crystal Properties
Matthews coefficientSolvent content
2.6854.02

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 117.664α = 90
b = 117.664β = 90
c = 157.842γ = 90
Symmetry
Space GroupI 4

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 300 mm CCD2019-03-19MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 21-ID-G0.979APS21-ID-G

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.894.3599.60.0460.99712.35.626405
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.82.8799.30.9960.8535.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB entry 4UHI2.828.09826289125899.5610.2280.22680.2559
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.5811.581-3.162
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.611
r_lrange_it15.389
r_lrange_other15.388
r_dihedral_angle_3_deg14.007
r_dihedral_angle_4_deg13.019
r_mcangle_it11.129
r_mcangle_other11.129
r_scangle_it10.792
r_scangle_other10.791
r_mcbond_it7.348
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.611
r_lrange_it15.389
r_lrange_other15.388
r_dihedral_angle_3_deg14.007
r_dihedral_angle_4_deg13.019
r_mcangle_it11.129
r_mcangle_other11.129
r_scangle_it10.792
r_scangle_other10.791
r_mcbond_it7.348
r_mcbond_other7.342
r_scbond_it6.923
r_scbond_other6.922
r_dihedral_angle_1_deg6.165
r_chiral_restr_other1.232
r_angle_refined_deg1.166
r_angle_other_deg1.134
r_nbd_other0.351
r_symmetry_nbd_refined0.298
r_symmetry_xyhbond_nbd_refined0.275
r_symmetry_nbd_other0.258
r_nbd_refined0.239
r_nbtor_refined0.178
r_xyhbond_nbd_refined0.176
r_symmetry_nbtor_other0.085
r_symmetry_xyhbond_nbd_other0.083
r_chiral_restr0.041
r_gen_planes_refined0.007
r_bond_refined_d0.003
r_gen_planes_other0.003
r_bond_other_d0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7172
Nucleic Acid Atoms
Solvent Atoms29
Heterogen Atoms457

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing