6O6X

Crystal structure of Csm6 W14A/E337A mutant in complex with cA4 by cocrystallization


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.229310% PEG 8K, 0.2 M NaCl, 0.1 M Na/K phosphate pH 6.2
Crystal Properties
Matthews coefficientSolvent content
2.5451.62

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 54.148α = 90
b = 115.745β = 90
c = 161.037γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2018-12-12MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 24-ID-E0.9791APS24-ID-E

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.15095.89.99.256521
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.12.18

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.1149.0953626283895.650.202580.200120.24923RANDOM48.038
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-3.174.36-1.18
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.593
r_dihedral_angle_4_deg19.421
r_dihedral_angle_3_deg18.536
r_long_range_B_other9.553
r_long_range_B_refined9.552
r_dihedral_angle_1_deg7.174
r_scangle_other7.167
r_mcangle_it4.844
r_mcangle_other4.844
r_scbond_other4.633
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.593
r_dihedral_angle_4_deg19.421
r_dihedral_angle_3_deg18.536
r_long_range_B_other9.553
r_long_range_B_refined9.552
r_dihedral_angle_1_deg7.174
r_scangle_other7.167
r_mcangle_it4.844
r_mcangle_other4.844
r_scbond_other4.633
r_scbond_it4.632
r_mcbond_it3.344
r_mcbond_other3.341
r_angle_refined_deg1.612
r_angle_other_deg1.237
r_chiral_restr0.075
r_bond_refined_d0.008
r_gen_planes_refined0.006
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6854
Nucleic Acid Atoms
Solvent Atoms96
Heterogen Atoms176

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
PHENIXphasing