6LV3

Co- Carbonic Anhydrase II pH 11.0 0 atm CO2


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP112931.3 M sodium citrate, 50 mM Tris-HCl
Crystal Properties
Matthews coefficientSolvent content
2.0840.98

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 42.33α = 90
b = 41.259β = 104.127
c = 72.083γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 2702019-12-17MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONPAL/PLS BEAMLINE 7A (6B, 6C1)0.9793PAL/PLS7A (6B, 6C1)

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.230950.0850.0910.0330.995237.671904
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.21.2291.70.4640.4970.1790.9094.37.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE5YUK1.23071822368694.9660.1240.12290.148913.94
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.022-0.070.0320.023
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free37.488
r_dihedral_angle_2_deg36.164
r_dihedral_angle_4_deg24.712
r_dihedral_angle_3_deg11.863
r_sphericity_bonded10.853
r_dihedral_angle_1_deg6.637
r_rigid_bond_restr6.027
r_lrange_it4.626
r_lrange_other4.493
r_scangle_it3.948
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free37.488
r_dihedral_angle_2_deg36.164
r_dihedral_angle_4_deg24.712
r_dihedral_angle_3_deg11.863
r_sphericity_bonded10.853
r_dihedral_angle_1_deg6.637
r_rigid_bond_restr6.027
r_lrange_it4.626
r_lrange_other4.493
r_scangle_it3.948
r_scangle_other3.947
r_scbond_it3.379
r_scbond_other3.378
r_angle_refined_deg2.484
r_mcangle_other2.107
r_mcangle_it2.055
r_mcbond_it1.583
r_mcbond_other1.456
r_angle_other_deg1.309
r_symmetry_nbd_refined0.336
r_nbd_other0.336
r_nbd_refined0.287
r_symmetry_xyhbond_nbd_refined0.214
r_chiral_restr0.211
r_symmetry_nbd_other0.192
r_nbtor_refined0.186
r_xyhbond_nbd_refined0.156
r_metal_ion_refined0.107
r_symmetry_nbtor_other0.086
r_bond_refined_d0.031
r_gen_planes_refined0.015
r_bond_other_d0.004
r_gen_planes_other0.004
r_symmetry_xyhbond_nbd_other0.004
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2049
Nucleic Acid Atoms
Solvent Atoms265
Heterogen Atoms7

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
REFMACphasing