X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP293.15crystals were obtained in Morpheus commercial crystallization screen, Imidazole and MES monohydrate (acid) at pH 6.5, 40% v/v PEG 500 MME and 20 % w/v PEG 20000, and 0.2M 1,6-Hexanediol, 0.2M 1-Butanol 0.2M 1,2-Propanediol, 0.2M 2-Propanol, 0.2M 1,4- Butanediol and 0.2M 1,3-Propanediol.
Crystal Properties
Matthews coefficientSolvent content
2.1141.84

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 37.25α = 90
b = 65.7β = 90
c = 75.01γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDRIGAKU SATURN 9442019-01-08MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SEALED TUBERIGAKU MICROMAX-0031.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.3530.1199.90.1920.1150.9825.86.58136
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.352.4399.40.370.2460.9093.25.3

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT5ZVP2.3530.11769940299.860.234480.232370.27505RANDOM18.237
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.820.2-1.03
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.038
r_dihedral_angle_4_deg23.348
r_dihedral_angle_3_deg13.685
r_dihedral_angle_1_deg5.821
r_long_range_B_refined2.514
r_long_range_B_other2.211
r_angle_refined_deg1.214
r_angle_other_deg1.055
r_chiral_restr0.039
r_mcangle_it0.034
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.038
r_dihedral_angle_4_deg23.348
r_dihedral_angle_3_deg13.685
r_dihedral_angle_1_deg5.821
r_long_range_B_refined2.514
r_long_range_B_other2.211
r_angle_refined_deg1.214
r_angle_other_deg1.055
r_chiral_restr0.039
r_mcangle_it0.034
r_mcangle_other0.034
r_scangle_other0.026
r_mcbond_it0.018
r_mcbond_other0.018
r_scbond_it0.018
r_scbond_other0.014
r_bond_refined_d0.002
r_gen_planes_refined0.002
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1414
Nucleic Acid Atoms
Solvent Atoms159
Heterogen Atoms33

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
Aimlessdata scaling
MOLREPphasing