6J2Y
Solution structure of translationally controlled tumor protein from photosynthetic microalga Nannochloropsis oceanica
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D 1H-15N NOESY | 1 mM [U-13C; U-15N] NoTCTP, 50 mM sodium phosphate, 200 mM potassium chloride, 5 mM DTT, 5 mM EDTA, 0.02 % w/v sodium azide, 0.01 % w/v DSS | 90% H2O/10% D2O | 250 mM | 7.8 | 1 atm | 308 | Bruker AVANCE III 600 |
2 | 3D 1H-13C NOESY aliphatic | 1 mM [U-13C; U-15N] NoTCTP, 50 mM sodium phosphate, 200 mM potassium chloride, 5 mM DTT, 5 mM EDTA, 0.02 % w/v sodium azide, 0.01 % w/v DSS | 90% H2O/10% D2O | 250 mM | 7.8 | 1 atm | 308 | Bruker AVANCE III 600 |
3 | 3D 1H-13C NOESY aromatic | 1 mM [U-13C; U-15N] NoTCTP, 50 mM sodium phosphate, 200 mM potassium chloride, 5 mM DTT, 5 mM EDTA, 0.02 % w/v sodium azide, 0.01 % w/v DSS | 90% H2O/10% D2O | 250 mM | 7.8 | 1 atm | 308 | Bruker AVANCE III 600 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE III | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | CNS |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | CNS | Brunger, Adams, Clore, Gros, Nilges and Read | |
2 | structure calculation | CNS | Brunger, Adams, Clore, Gros, Nilges and Read | |
3 | chemical shift assignment | NMRView | Johnson, One Moon Scientific | |
4 | peak picking | NMRView | Johnson, One Moon Scientific |