6IAF

Fifteen minutes iron loaded Rana Catesbeiana H' ferritin variant H54N


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP92811.6-2.0 M MgCl2 and 0.1 M bicine pH 9.0
Crystal Properties
Matthews coefficientSolvent content
3.2662.32

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 183.72α = 90
b = 183.72β = 90
c = 183.72γ = 90
Symmetry
Space GroupF 4 3 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 225 mm CCD2012-10-08MSINGLE WAVELENGTH
21x-ray100PIXELDECTRIS PILATUS 2M2012-10-29MSINGLE WAVELENGTH
31x-ray100PIXELDECTRIS PILATUS 2M2012-10-29MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE BM140.95372ESRFBM14
2SYNCHROTRONELETTRA BEAMLINE 5.2R1.73893ELETTRA5.2R
3SYNCHROTRONELETTRA BEAMLINE 5.2R1.76116ELETTRA5.2R

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.3522.441000.0730.0780.02122.314.25851229.93
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.351.421000.4470.480.128613.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT4LQH1.3522.4455550296099.940.114650.113260.14072RANDOM10.748
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.644
r_dihedral_angle_4_deg20.392
r_dihedral_angle_3_deg13.33
r_dihedral_angle_1_deg4.547
r_long_range_B_refined3.372
r_long_range_B_other2.025
r_scangle_other1.759
r_rigid_bond_restr1.624
r_angle_other_deg1.585
r_angle_refined_deg1.481
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.644
r_dihedral_angle_4_deg20.392
r_dihedral_angle_3_deg13.33
r_dihedral_angle_1_deg4.547
r_long_range_B_refined3.372
r_long_range_B_other2.025
r_scangle_other1.759
r_rigid_bond_restr1.624
r_angle_other_deg1.585
r_angle_refined_deg1.481
r_scbond_it1.414
r_scbond_other1.414
r_mcangle_it1.133
r_mcangle_other1.133
r_mcbond_it0.927
r_mcbond_other0.924
r_chiral_restr0.081
r_bond_refined_d0.009
r_gen_planes_refined0.008
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1413
Nucleic Acid Atoms
Solvent Atoms361
Heterogen Atoms22

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
XDSdata reduction
SCALAdata scaling
MOLREPphasing