6IA9

urate oxidase under 2000 bar (220 MPa) of argon


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1BATCH MODE829120 microliter of protein (15 mg/ml) mixed with 20 microliter of solution: Buffer Tris 0.05M (chloride free) + 4% PEG 4000.
Crystal Properties
Matthews coefficientSolvent content
2.957.5

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 78.552α = 90
b = 96.682β = 90
c = 105.579γ = 90
Symmetry
Space GroupP 21 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 S 6M2016-05-10MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID30B1.77ESRFID30B

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.72371.32293.80.0570.0620.0170.99922.811.472278
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.7231.82656.50.5420.630.260.80225.3

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE1r56 reconstructed dimer1.846.33372278358396.2080.2110.2090.243234.255
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.0040.003
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.701
r_dihedral_angle_4_deg18.603
r_dihedral_angle_3_deg17.12
r_dihedral_angle_1_deg8.192
r_lrange_it6.921
r_scangle_it5.941
r_scbond_it4.836
r_mcangle_it4.755
r_mcbond_it4.021
r_angle_refined_deg1.451
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.701
r_dihedral_angle_4_deg18.603
r_dihedral_angle_3_deg17.12
r_dihedral_angle_1_deg8.192
r_lrange_it6.921
r_scangle_it5.941
r_scbond_it4.836
r_mcangle_it4.755
r_mcbond_it4.021
r_angle_refined_deg1.451
r_metal_ion_refined0.34
r_nbtor_refined0.317
r_nbd_refined0.22
r_symmetry_nbd_refined0.193
r_xyhbond_nbd_refined0.174
r_chiral_restr0.116
r_symmetry_xyhbond_nbd_refined0.106
r_gen_planes_refined0.012
r_bond_refined_d0.007
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4718
Nucleic Acid Atoms
Solvent Atoms491
Heterogen Atoms56

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
MOLREPphasing