6I9F
Solution structure of As-p18 reveals that nematode fatty acid binding proteins exhibit unusual structural features
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D 1H-13C NOESY | 0.4 mM [U-99% 13C; U-99% 15N] rAs-p18 | 95% H2O/5% D2O | 20 mM | 7.2 | 1 atm | 298 | Bruker AVANCE 600 |
2 | niceF2filtNOE | 0.5 mM [U-99% 13C; U-99% 15N] rAs-p18, 2 mM sodium oleate | 95% H2O/5% D2O | 20 mM | 7.4 | 1 atm | 298 | Bruker AVANCE 600 |
3 | F1filtCdec | 0.5 mM [U-99% 13C; U-99% 15N] rAs-p18, 2 mM sodium oleate | 95% H2O/5% D2O | 20 mM | 7.4 | 1 atm | 298 | Bruker AVANCE 600 |
4 | 3D 1H-13C NOESY | 0.5 mM [U-99% 13C; U-99% 15N] rAs-p18, 2 mM sodium oleate | 95% H2O/5% D2O | 20 mM | 7.4 | 1 atm | 298 | Bruker AVANCE 600 |
5 | D 1H-15N NOESY | 0.5 mM [U-99% 13C; U-99% 15N] rAs-p18, 2 mM sodium oleate | 95% H2O/5% D2O | 20 mM | 7.4 | 1 atm | 298 | Bruker AVANCE 600 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | CNS | |
simulated annealing | ARIA |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | structure calculation | ARIA | 2.3.1 | Linge, O'Donoghue and Nilges |
2 | data analysis | CcpNmr Analysis | 2.4 | CCPN |
3 | processing | Azara | Boucher | |
4 | data analysis | DANGLE | 1.1 | Broadhurst |
5 | collection | TopSpin | Bruker Biospin | |
6 | data analysis | CcpNmr Entry Completion Interface | 2.1 | CCPN & PDBE |
7 | structure calculation | CNS | 1.2 | Brunger, Adams, Clore, Gros, Nilges and Read |