6HX1

IRE1 ALPHA IN COMPLEX WITH imidazo[1,2-b]pyridazin-8-amine compound 2


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2770 % Isopropanol 10 % PEG4000 0.10 M Na-citrate pH=5.75 Protein at 9mg/mL was in 20 mM TRIS/Cl pH=8.0, 150 mM NaCl, 5 mM DTT, and 2mM compound was added to the protein before setting up trays.
Crystal Properties
Matthews coefficientSolvent content
359.01

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 144.408α = 90
b = 47.074β = 112.14
c = 86.369γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2014-10-23MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06SA1SLSX06SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.138094.50.0810.99815.833.728816
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.132.3891.60.5173.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT4Z7G2.148027136153795.480.219420.216730.2676RANDOM38.771
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-3.04-0.353.180.11
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.865
r_dihedral_angle_4_deg13.403
r_dihedral_angle_3_deg13.271
r_long_range_B_other7.316
r_long_range_B_refined7.308
r_dihedral_angle_1_deg6.085
r_scangle_other5.587
r_mcangle_it4.498
r_mcangle_other4.497
r_scbond_it3.57
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.865
r_dihedral_angle_4_deg13.403
r_dihedral_angle_3_deg13.271
r_long_range_B_other7.316
r_long_range_B_refined7.308
r_dihedral_angle_1_deg6.085
r_scangle_other5.587
r_mcangle_it4.498
r_mcangle_other4.497
r_scbond_it3.57
r_scbond_other3.565
r_mcbond_other3.081
r_mcbond_it3.08
r_angle_other_deg2.594
r_angle_refined_deg1.251
r_chiral_restr0.07
r_bond_refined_d0.007
r_gen_planes_refined0.004
r_gen_planes_other0.002
r_bond_other_d0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3134
Nucleic Acid Atoms
Solvent Atoms122
Heterogen Atoms24

Software

Software
Software NamePurpose
XDSdata reduction
XSCALEdata scaling
REFMACrefinement
MOLREPphasing