X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1EVAPORATION6.752930.46 M Na-citrate
Crystal Properties
Matthews coefficientSolvent content
4.2270.82

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 163.163α = 90
b = 245.317β = 90
c = 261.588γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M-F2017-12-11MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X10SA0.99992SLSX10SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Rrim I (All)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.544.6299.90.14515.648.4179844
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Rrim I (All)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.52.5699.61.568.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT2.544.62170840899299.910.204630.203410.22785RANDOM48.577
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.621.12-0.49
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.022
r_dihedral_angle_4_deg15.584
r_dihedral_angle_3_deg14.195
r_dihedral_angle_1_deg6.496
r_long_range_B_refined4.086
r_long_range_B_other4.086
r_mcangle_it2.492
r_mcangle_other2.492
r_scangle_other2.085
r_mcbond_it1.388
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.022
r_dihedral_angle_4_deg15.584
r_dihedral_angle_3_deg14.195
r_dihedral_angle_1_deg6.496
r_long_range_B_refined4.086
r_long_range_B_other4.086
r_mcangle_it2.492
r_mcangle_other2.492
r_scangle_other2.085
r_mcbond_it1.388
r_mcbond_other1.388
r_scbond_it1.159
r_scbond_other1.159
r_angle_refined_deg0.916
r_angle_other_deg0.261
r_chiral_restr0.037
r_bond_refined_d0.002
r_gen_planes_refined0.002
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms20379
Nucleic Acid Atoms
Solvent Atoms715
Heterogen Atoms138

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing