X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2930.2M MgCl2, 0.1M BIS-TRIS pH=6.5, 25% PEG 3350, 1.7mM CdCl2
Crystal Properties
Matthews coefficientSolvent content
2.0339.35

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 53.661α = 90
b = 53.661β = 90
c = 58.074γ = 120
Symmetry
Space GroupP 31 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2017-08-19MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONBESSY BEAMLINE 14.10.9184BESSY14.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.446.4798.60.1690.99411.99.23988
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.42.4988.40.912.34.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT3W5X2.446.47346238395.080.244990.237620.3144RANDOM45.503
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.39-0.19-0.391.26
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.958
r_dihedral_angle_3_deg13.826
r_dihedral_angle_4_deg10.329
r_dihedral_angle_1_deg5.8
r_long_range_B_refined3.027
r_long_range_B_other3.025
r_mcangle_it1.429
r_mcangle_other1.427
r_scangle_other1.393
r_scbond_it0.929
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.958
r_dihedral_angle_3_deg13.826
r_dihedral_angle_4_deg10.329
r_dihedral_angle_1_deg5.8
r_long_range_B_refined3.027
r_long_range_B_other3.025
r_mcangle_it1.429
r_mcangle_other1.427
r_scangle_other1.393
r_scbond_it0.929
r_scbond_other0.925
r_angle_refined_deg0.9
r_mcbond_other0.822
r_mcbond_it0.821
r_angle_other_deg0.644
r_chiral_restr0.048
r_bond_refined_d0.005
r_gen_planes_refined0.003
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms698
Nucleic Acid Atoms
Solvent Atoms11
Heterogen Atoms5

Software

Software
Software NamePurpose
REFMACrefinement
PHENIXrefinement
XDSdata reduction
Aimlessdata scaling
STARANISOdata scaling
PHASERphasing