X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP72930.20 M KCl, 0.10 M Hepes/NaOH pH=7, 21.2 % (w/v) PEG 5K MME
Crystal Properties
Matthews coefficientSolvent content
2.653.1

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 108.055α = 90
b = 96.209β = 112.81
c = 108.984γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 16M2016-01-09MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06SA1.0000SLSX06SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.63100.4696.50.0849.972.859335
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.632.8897.40.4352.72.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.63100.465851382196.690.217010.216270.26963RANDOM54.255
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.272.16-0.39-0.12
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.477
r_dihedral_angle_4_deg13.541
r_dihedral_angle_3_deg12.172
r_long_range_B_refined10.833
r_long_range_B_other10.83
r_scangle_other8.606
r_mcangle_it7.762
r_mcangle_other7.761
r_dihedral_angle_1_deg5.976
r_scbond_it5.945
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.477
r_dihedral_angle_4_deg13.541
r_dihedral_angle_3_deg12.172
r_long_range_B_refined10.833
r_long_range_B_other10.83
r_scangle_other8.606
r_mcangle_it7.762
r_mcangle_other7.761
r_dihedral_angle_1_deg5.976
r_scbond_it5.945
r_scbond_other5.945
r_mcbond_it5.293
r_mcbond_other5.292
r_angle_refined_deg1.237
r_angle_other_deg0.864
r_chiral_restr0.067
r_bond_refined_d0.006
r_bond_other_d0.005
r_gen_planes_refined0.004
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms13510
Nucleic Acid Atoms
Solvent Atoms45
Heterogen Atoms30

Software

Software
Software NamePurpose
XDSdata reduction
XSCALEdata scaling
REFMACrefinement
MOLREPphasing