6GVQ

DNA-bound pRN1 helix bundle domain with ATP and magnesium in the interaction buffer

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	3D HNCA	1.1 mM [U-99% 13C; U-99% 15N] DNA-bound pRN1 helix bundle domain with ATP, 1.1 mM DNA (5'-D(*CP*TP*GP*TP*GP*CP*TP*CP*A)-3')	90% H2O/10% D2O	50mM NaCl mM	7.0	ambient atm	298	Bruker AVANCE III 700
2	3D HN(CO)CA	1.1 mM [U-99% 13C; U-99% 15N] DNA-bound pRN1 helix bundle domain with ATP, 1.1 mM DNA (5'-D(*CP*TP*GP*TP*GP*CP*TP*CP*A)-3')	90% H2O/10% D2O	50mM NaCl mM	7.0	ambient atm	298	Bruker AVANCE III 700
3	3D CBCA(CO)NH	1.1 mM [U-99% 13C; U-99% 15N] DNA-bound pRN1 helix bundle domain with ATP, 1.1 mM DNA (5'-D(*CP*TP*GP*TP*GP*CP*TP*CP*A)-3')	90% H2O/10% D2O	50mM NaCl mM	7.0	ambient atm	298	Bruker AVANCE III 700
4	3D HNCACB	1.1 mM [U-99% 13C; U-99% 15N] DNA-bound pRN1 helix bundle domain with ATP, 1.1 mM DNA (5'-D(*CP*TP*GP*TP*GP*CP*TP*CP*A)-3')	90% H2O/10% D2O	50mM NaCl mM	7.0	ambient atm	298	Bruker AVANCE III 700
5	3D HNCO	1.1 mM [U-99% 13C; U-99% 15N] DNA-bound pRN1 helix bundle domain with ATP, 1.1 mM DNA (5'-D(*CP*TP*GP*TP*GP*CP*TP*CP*A)-3')	90% H2O/10% D2O	50mM NaCl mM	7.0	ambient atm	298	Bruker AVANCE III 700
6	HN(CA)CO	1.1 mM [U-99% 13C; U-99% 15N] DNA-bound pRN1 helix bundle domain with ATP, 1.1 mM DNA (5'-D(*CP*TP*GP*TP*GP*CP*TP*CP*A)-3')	90% H2O/10% D2O	50mM NaCl mM	7.0	ambient atm	298	Bruker AVANCE III 700
7	3D C(CO)NH	1.1 mM [U-99% 13C; U-99% 15N] DNA-bound pRN1 helix bundle domain with ATP, 1.1 mM DNA (5'-D(*CP*TP*GP*TP*GP*CP*TP*CP*A)-3')	90% H2O/10% D2O	50mM NaCl mM	7.0	ambient atm	298	Bruker AVANCE III 700
8	3D H(CCO)NH	1.1 mM [U-99% 13C; U-99% 15N] DNA-bound pRN1 helix bundle domain with ATP, 1.1 mM DNA (5'-D(*CP*TP*GP*TP*GP*CP*TP*CP*A)-3')	90% H2O/10% D2O	50mM NaCl mM	7.0	ambient atm	298	Bruker AVANCE III 700
9	3D 1H-15N NOESY	1.1 mM [U-99% 13C; U-99% 15N] DNA-bound pRN1 helix bundle domain with ATP, 1.1 mM DNA (5'-D(*CP*TP*GP*TP*GP*CP*TP*CP*A)-3')	90% H2O/10% D2O	50mM NaCl mM	7.0	ambient atm	298	Bruker AVANCE III HD 900
10	3D 1H-13C NOESY aliphatic	1.1 mM [U-99% 13C; U-99% 15N] DNA-bound pRN1 helix bundle domain with ATP, 1.1 mM DNA (5'-D(*CP*TP*GP*TP*GP*CP*TP*CP*A)-3')	90% H2O/10% D2O	50mM NaCl mM	7.0	ambient atm	298	Bruker AVANCE III HD 900
11	3D 1H-13C NOESY aromatic	1.1 mM [U-99% 13C; U-99% 15N] DNA-bound pRN1 helix bundle domain with ATP, 1.1 mM DNA (5'-D(*CP*TP*GP*TP*GP*CP*TP*CP*A)-3')	90% H2O/10% D2O	50mM NaCl mM	7.0	ambient atm	298	Bruker AVANCE III HD 900
12	3D 1H-13C NOESY aromatic	0.7 mM [U-100% 13C] DNA-bound pRN1 helix bundle domain with ATP, 0.7 mM DNA (5'-D(*CP*TP*GP*TP*GP*CP*TP*CP*A)-3')	100% D2O	50mM NaCl mM	7.0	ambient atm	298	Bruker AVANCE III HD 900
13	2D 1H-1H NOESY	1.0 mM DNA-bound pRN1 helix bundle domain with ATP, 1.0 mM DNA (5'-D(*CP*TP*GP*TP*GP*CP*TP*CP*A)-3')	90% H2O/10% D2O	50mM NaCl mM	7.0	ambient atm	298	Bruker AVANCE III 700
14	2D 1H-1H TOCSY	1.0 mM DNA-bound pRN1 helix bundle domain with ATP, 1.0 mM DNA (5'-D(*CP*TP*GP*TP*GP*CP*TP*CP*A)-3')	90% H2O/10% D2O	50mM NaCl mM	7.0	ambient atm	298	Bruker AVANCE III 700
15	2D 1H-15N HSQC	1.1 mM [U-99% 13C; U-99% 15N] DNA-bound pRN1 helix bundle domain with ATP, 1.1 mM DNA (5'-D(*CP*TP*GP*TP*GP*CP*TP*CP*A)-3')	90% H2O/10% D2O	50mM NaCl mM	7.0	ambient atm	298	Bruker AVANCE III HD 900
16	2D 1H-15N HSQC	1.1 mM [U-99% 13C; U-99% 15N] DNA-bound pRN1 helix bundle domain with ATP, 1.1 mM DNA (5'-D(*CP*TP*GP*TP*GP*CP*TP*CP*A)-3')	90% H2O/10% D2O	50mM NaCl mM	7.0	ambient atm	298	Bruker AVANCE III 700
17	2D 1H-15N HSQC	1.1 mM [U-99% 13C; U-99% 15N] DNA-bound pRN1 helix bundle domain with ATP, 1.1 mM DNA (5'-D(*CP*TP*GP*TP*GP*CP*TP*CP*A)-3')	90% H2O/10% D2O	100mM NaCl mM	5.0	ambient atm	298	Bruker AVANCE III 700
18	2D 1H-15N HSQC	1.1 mM [U-99% 13C; U-99% 15N] DNA-bound pRN1 helix bundle domain with ATP, 1.1 mM DNA (5'-D(*CP*TP*GP*TP*GP*CP*TP*CP*A)-3')	90% H2O/10% D2O	50mM NaCl mM	7.0	ambient atm	278	Bruker AVANCE III 700
19	2D 1H-13C HSQC aliphatic	1.1 mM [U-99% 13C; U-99% 15N] DNA-bound pRN1 helix bundle domain with ATP, 1.1 mM DNA (5'-D(*CP*TP*GP*TP*GP*CP*TP*CP*A)-3')	90% H2O/10% D2O	50mM NaCl mM	7.0	ambient atm	298	Bruker AVANCE III 700
20	2D 1H-13C HSQC aromatic	1.1 mM [U-99% 13C; U-99% 15N] DNA-bound pRN1 helix bundle domain with ATP, 1.1 mM DNA (5'-D(*CP*TP*GP*TP*GP*CP*TP*CP*A)-3')	90% H2O/10% D2O	50mM NaCl mM	7.0	ambient atm	298	Bruker AVANCE III 700
21	2D 1H-13C HSQC aliphatic	0.7 mM [U-100% 13C] DNA-bound pRN1 helix bundle domain with ATP, 0.7 mM DNA (5'-D(*CP*TP*GP*TP*GP*CP*TP*CP*A)-3')	100% D2O	50mM NaCl mM	7.0	ambient atm	298	Bruker AVANCE III 700
22	2D 1H-13C HSQC aromatic	0.7 mM [U-100% 13C] DNA-bound pRN1 helix bundle domain with ATP, 0.7 mM DNA (5'-D(*CP*TP*GP*TP*GP*CP*TP*CP*A)-3')	100% D2O	50mM NaCl mM	7.0	ambient atm	298	Bruker AVANCE III 700
23	2D-F1fF2f-NOESY	0.7 mM [U-100% 13C] DNA-bound pRN1 helix bundle domain with ATP, 0.7 mM DNA (5'-D(*CP*TP*GP*TP*GP*CP*TP*CP*A)-3')	100% D2O	50mM NaCl mM	7.0	ambient atm	298	Bruker AVANCE III 700
24	2D-F2f-NOESY	0.7 mM [U-100% 13C] DNA-bound pRN1 helix bundle domain with ATP, 0.7 mM DNA (5'-D(*CP*TP*GP*TP*GP*CP*TP*CP*A)-3')	100% D2O	50mM NaCl mM	7.0	ambient atm	298	Bruker AVANCE III 700
25	3D 13Caliphatic Hfiltered-Hedited NOESY	0.7 mM [U-100% 13C] DNA-bound pRN1 helix bundle domain with ATP, 0.7 mM DNA (5'-D(*CP*TP*GP*TP*GP*CP*TP*CP*A)-3')	100% D2O	50mM NaCl mM	7.0	ambient atm	298	Bruker AVANCE III 700
26	3D 13Caromatic Hfiltered-Hedited NOESY	0.7 mM [U-100% 13C] DNA-bound pRN1 helix bundle domain with ATP, 0.7 mM DNA (5'-D(*CP*TP*GP*TP*GP*CP*TP*CP*A)-3')	100% D2O	50mM NaCl mM	7.0	ambient atm	298	Bruker AVANCE III 700
27	2D imino NOESY	1.0 mM DNA-bound pRN1 helix bundle domain with ATP, 1.0 mM DNA (5'-D(*CP*TP*GP*TP*GP*CP*TP*CP*A)-3')	90% H2O/10% D2O	50mM NaCl mM	7.0	ambient atm	298	Bruker AVANCE III 700
28	2D imino NOESY	1.0 mM DNA-bound pRN1 helix bundle domain with ATP, 1.0 mM DNA (5'-D(*CP*TP*GP*TP*GP*CP*TP*CP*A)-3')	90% H2O/10% D2O	50mM NaCl mM	7.0	ambient atm	278	Bruker AVANCE III 700
29	2D natural abundance Chsqc	1.0 mM DNA-bound pRN1 helix bundle domain with ATP, 1.0 mM DNA (5'-D(*CP*TP*GP*TP*GP*CP*TP*CP*A)-3')	90% H2O/10% D2O	50mM NaCl mM	7.0	ambient atm	298	Bruker AVANCE III 600

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE III HD	900
2	Bruker	AVANCE III	700
3	Bruker	AVANCE III	600

NMR Refinement
Method	Details	Software
simulated annealing		Amber

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	200
Conformers Submitted Total Number	20
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	structure calculation	CYANA		Guntert P.
2	processing	TopSpin		Bruker Biospin
3	data analysis	Sparky		Goddard
4	peak picking	CANDID		Herrmann, Guntert and Wuthrich
5	refinement	Amber		Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman
6	collection	TopSpin		Bruker Biospin
7	chemical shift assignment	MARS		Jung and Zweckstetter