6FIC

Bivalent Inhibitor UNC4512 Bound to the TAF1 Bromodomain Tandem


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2930.1 M HEPES pH 7.5, 4.2 M NaCl
Crystal Properties
Matthews coefficientSolvent content
4.1370.23

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 113.573α = 90
b = 113.573β = 90
c = 72.592γ = 120
Symmetry
Space GroupP 32 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 6M2017-04-20MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I240.9686DiamondI24

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.1898.361000.010990.12113.210.128664
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.182.21992.410.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1EQF2.1898.3627236141099.940.203190.201480.23595RANDOM40.443
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.190.090.19-0.62
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.499
r_dihedral_angle_4_deg20.724
r_dihedral_angle_3_deg13.515
r_long_range_B_refined7.262
r_long_range_B_other7.259
r_scangle_other6.391
r_dihedral_angle_1_deg5.28
r_scbond_it4.496
r_scbond_other4.494
r_mcangle_other4.44
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.499
r_dihedral_angle_4_deg20.724
r_dihedral_angle_3_deg13.515
r_long_range_B_refined7.262
r_long_range_B_other7.259
r_scangle_other6.391
r_dihedral_angle_1_deg5.28
r_scbond_it4.496
r_scbond_other4.494
r_mcangle_other4.44
r_mcangle_it4.438
r_mcbond_it3.479
r_mcbond_other3.478
r_angle_refined_deg1.812
r_angle_other_deg1.061
r_chiral_restr0.103
r_bond_refined_d0.02
r_gen_planes_refined0.012
r_bond_other_d0.002
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1970
Nucleic Acid Atoms
Solvent Atoms93
Heterogen Atoms59

Software

Software
Software NamePurpose
REFMACrefinement
xia2data reduction
xia2data scaling
PHASERphasing