6E6N

Pheromone from Euplotes raikovi, Er-13


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP3.52930.1 M to 0.2 M (NH4)2SO4, 0.05 M Na Citrate pH 3.5 and 6% (v/v) ethanol, using 5-ul protein drops and 5 ul of reservoir solution
Crystal Properties
Matthews coefficientSolvent content
1.8332.92

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 39.116α = 90
b = 39.116β = 90
c = 19.446γ = 90
Symmetry
Space GroupP 43

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2015-02-20MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X10SA0.6198SLSX10SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.3639.121000.052419.4113.385988
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.3631.4110.89270.9315

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONAB INITIO PHASINGTHROUGHOUT1.36339.12582964899.970.155060.152180.1803RANDOM21.775
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.60.6-1.2
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg55.951
r_dihedral_angle_3_deg13.215
r_long_range_B_refined5.867
r_long_range_B_other5.832
r_dihedral_angle_1_deg5.516
r_scangle_other3.137
r_scbond_it2.295
r_scbond_other2.288
r_angle_refined_deg1.846
r_mcangle_other1.536
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg55.951
r_dihedral_angle_3_deg13.215
r_long_range_B_refined5.867
r_long_range_B_other5.832
r_dihedral_angle_1_deg5.516
r_scangle_other3.137
r_scbond_it2.295
r_scbond_other2.288
r_angle_refined_deg1.846
r_mcangle_other1.536
r_mcangle_it1.498
r_angle_other_deg1.085
r_mcbond_it1.076
r_mcbond_other0.948
r_chiral_restr0.1
r_bond_refined_d0.018
r_gen_planes_refined0.008
r_bond_other_d0.004
r_gen_planes_other0.002
r_dihedral_angle_4_deg
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms276
Nucleic Acid Atoms
Solvent Atoms23
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XDSdata scaling
Arcimboldophasing