6CE5

NMR structure of the Rous sarcoma virus matrix protein (M-domain) in the presence of myo-inositol hexakisphosphate


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC0.5 mM [U-95% 15N] Matrix protein, 50 mM sodium phosphate, 2 mM tcep, 2 mM IP695% H2O/5% D2O0.05 M61 atm305Bruker AVANCE II 700
22D 1H-13C HSQC0.5 mM [U-95% 13C; U-95% 15N] Matrix protein, 50 mM sodium phosphate, 2 mM tcep, 2 mM IP695% H2O/5% D2O0.05 M61 atm305Bruker AVANCE II 700
33D HNCA0.5 mM [U-95% 13C; U-95% 15N] Matrix protein, 50 mM sodium phosphate, 2 mM tcep, 2 mM IP695% H2O/5% D2O0.05 M61 atm305Bruker AVANCE II 700
43D HN(CO)CA0.5 mM [U-95% 13C; U-95% 15N] Matrix protein, 50 mM sodium phosphate, 2 mM tcep, 2 mM IP695% H2O/5% D2O0.05 M61 atm305Bruker AVANCE II 700
53D HNCACB0.5 mM [U-95% 13C; U-95% 15N] Matrix protein, 50 mM sodium phosphate, 2 mM tcep, 2 mM IP695% H2O/5% D2O0.05 M61 atm305Bruker AVANCE II 700
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE II700
NMR Refinement
MethodDetailsSoftware
torsion angle dynamicsCYANA
torsion angle dynamicsUNIO
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number80
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
4processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
3chemical shift assignmentAnalysisCCPN
1structure calculationCYANAGuntert, Mumenthaler and Wuthrich
2structure calculationUNIOHerrmann