6C76

Structure of Iron containing alcohol dehydrogenase from Thermococcus thioreducens in an orthorhombic crystal form

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	4.6	298	0.1 M sodium acetate, 10% PEG 10,000 at pH 4.6

Crystal Properties
Matthews coefficient	Solvent content
2.34	47

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 48.92	α = 90
b = 111.978	β = 90
c = 142.081	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	298	CCD	RIGAKU SATURN 944+	OSMIC MIRRORS	2013-04-18	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	ROTATING ANODE	RIGAKU MICROMAX-007 HF	1.54187

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.1	43.97	90	0.209	0.214	0.041	0.995	13	20.4		41831			36.7

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.1	2.16	35.6		0.974	1.192	0.67	0.222	0.7	2.4

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	6C75	2.1	33.04	39750	2018	89.82	0.15633	0.15387	0.20419	RANDOM	46.619

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.03			0.98		-0.95

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	35.979
r_dihedral_angle_4_deg	23.011
r_dihedral_angle_3_deg	18.033
r_long_range_B_refined	10.5
r_long_range_B_other	10.478
r_scangle_it	7.737
r_scangle_other	7.737
r_dihedral_angle_1_deg	7.442
r_mcangle_other	4.997
r_mcangle_it	4.995
r_scbond_it	4.862
r_scbond_other	4.862
r_mcbond_it	3.46
r_mcbond_other	3.453
r_angle_refined_deg	0.964
r_angle_other_deg	0.618
r_symmetry_vdw_refined	0.294
r_symmetry_hbond_refined	0.288
r_symmetry_vdw_other	0.266
r_nbd_refined	0.235
r_nbd_other	0.199
r_nbtor_refined	0.191
r_xyhbond_nbd_refined	0.134
r_nbtor_other	0.089
r_symmetry_hbond_other	0.088
r_chiral_restr	0.061
r_xyhbond_nbd_other	0.054
r_gen_planes_refined	0.017
r_bond_refined_d	0.005
r_bond_other_d	0.004
r_gen_planes_other	0.003
r_metal_ion_refined
r_metal_ion_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	5852
Nucleic Acid Atoms
Solvent Atoms	293
Heterogen Atoms	63

Software

Software
Software Name	Purpose
REFMAC	refinement
MOSFLM	data reduction
Aimless	data scaling
PHASER	phasing