6BYV
Solution NMR structure of cysteine-rich calcium bound domains of very low density lipoprotein receptor
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 350 uM [U-99% 15N] VLDLR | 93% H2O/7% D2O | 100 mM | 6.2 | 760 mmHg | 306.5 | Bruker AVANCE 600 |
2 | 3D HNCACB | 250 uM [U-99% 13C; U-99% 15N] VLDLR | 93% H2O/7% D2O | 100 mM | 6.2 | 760 mmHg | 306.5 | Bruker AVANCE 600 |
3 | 3D CBCA(CO)NH | 250 uM [U-99% 13C; U-99% 15N] VLDLR | 93% H2O/7% D2O | 100 mM | 6.2 | 760 mmHg | 306.5 | Bruker AVANCE 600 |
4 | 3D HNCA | 250 uM [U-99% 13C; U-99% 15N] VLDLR | 93% H2O/7% D2O | 100 mM | 6.2 | 760 mmHg | 306.5 | Bruker AVANCE 600 |
5 | 3D HNCO | 250 uM [U-99% 13C; U-99% 15N] VLDLR | 93% H2O/7% D2O | 100 mM | 6.2 | 760 mmHg | 306.5 | Bruker AVANCE 600 |
6 | 3D 1H-15N NOESY | 350 uM [U-99% 15N] VLDLR | 93% H2O/7% D2O | 100 mM | 6.2 | 760 mmHg | 306.5 | Bruker AVANCE 600 |
7 | 3D 1H-13C NOESY | 250 uM [U-99% 13C; U-99% 15N] VLDLR | 100% D2O | 100 mM | 6.2 | 760 mmHg | 306.5 | Bruker AVANCE 600 |
8 | 2D 1H-15N HSQC | 350 uM [U-99% 15N] VLDLR | 93% H2O/7% D2O | 100 mM | 6.2 | 760 mmHg | 306.5 | Bruker AVANCE 800 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
2 | Bruker | AVANCE | 800 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | X-PLOR NIH |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 500 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | collection | TopSpin | Bruker Biospin | |
2 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
3 | data analysis | Analysis | CCPN | |
4 | refinement | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
5 | geometry optimization | TALOS | Cornilescu, Delaglio and Bax |