6BNH

Solution NMR structures of BRD4 ET domain with JMJD6 peptide


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC10 mM sodium phosphate, 100 mM sodium chloride, 2 mM [U-100% 2H] DTT95% H2O/5% D2O6.51 atm298Bruker AVANCE 600
23D HNCACB10 mM sodium phosphate, 100 mM sodium chloride, 2 mM [U-100% 2H] DTT95% H2O/5% D2O6.51 atm298Bruker AVANCE 600
33D CBCA(CO)NH10 mM sodium phosphate, 100 mM sodium chloride, 2 mM [U-100% 2H] DTT95% H2O/5% D2O6.51 atm298Bruker AVANCE 600
43D 1H-15N NOESY10 mM sodium phosphate, 100 mM sodium chloride, 2 mM [U-100% 2H] DTT95% H2O/5% D2O6.51 atm298Bruker AVANCE 800
53D 1H-13C NOESY aliphatic10 mM sodium phosphate, 100 mM sodium chloride, 2 mM [U-100% 2H] DTT100% D2O6.51 atm298Bruker AVANCE 900
63D 1H-13C NOESY aromatic10 mM sodium phosphate, 100 mM sodium chloride, 2 mM [U-100% 2H] DTT100% D2O6.51 atm298Bruker AVANCE 900
73D filtered 1H-13C NOESY aliphatic10 mM sodium phosphate, 100 mM sodium chloride, 2 mM [U-100% 2H] DTT100% D2O6.51 atm298Bruker AVANCE 900
83D filtered 1H-13C NOESY aromatic10 mM sodium phosphate, 100 mM sodium chloride, 2 mM [U-100% 2H] DTT100% D2O6.51 atm298Bruker AVANCE 900
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE900
2BrukerAVANCE800
3BrukerAVANCE600
NMR Refinement
MethodDetailsSoftware
torsion angle dynamicsARIA
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number200
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1refinementARIA2.3Linge, O'Donoghue and Nilges
2structure calculationCNSBrunger, Adams, Clore, Gros, Nilges and Read
3chemical shift assignmentNMRViewJohnson, One Moon Scientific
4peak pickingNMRViewJohnson, One Moon Scientific
5processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
6data analysisProcheckNMRLaskowski and MacArthur
7collectionTopSpinBruker Biospin