6AHS

Mouse Kallikrein 7 in complex with imidazolinylindole derivative


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP8293PEG 8000, PEG 400, magnesium chloride, Tris/HCl
Crystal Properties
Matthews coefficientSolvent content
2.5451.59

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 71.156α = 90
b = 71.156β = 90
c = 98.907γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATERIGAKU RAXIS IV++2012-07-10MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU MICROMAX-0071.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.7510099.117.613.226249
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.751.78

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT5ZFH1.7530.2924117127996.070.169430.167290.21177RANDOM29.665
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.610.61-1.23
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.468
r_dihedral_angle_4_deg26.538
r_dihedral_angle_3_deg15.685
r_dihedral_angle_1_deg6.85
r_long_range_B_refined6.41
r_long_range_B_other6.402
r_scangle_other4.669
r_scbond_it3.146
r_scbond_other3.127
r_mcangle_other2.265
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.468
r_dihedral_angle_4_deg26.538
r_dihedral_angle_3_deg15.685
r_dihedral_angle_1_deg6.85
r_long_range_B_refined6.41
r_long_range_B_other6.402
r_scangle_other4.669
r_scbond_it3.146
r_scbond_other3.127
r_mcangle_other2.265
r_mcangle_it2.262
r_mcbond_it1.742
r_mcbond_other1.719
r_angle_refined_deg1.591
r_angle_other_deg0.702
r_chiral_restr0.111
r_bond_refined_d0.02
r_gen_planes_refined0.019
r_gen_planes_other0.002
r_bond_other_d0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1716
Nucleic Acid Atoms
Solvent Atoms142
Heterogen Atoms36

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
AMoREphasing