5Z7F

Horse Heart Myoglobin Mutant -V68A/I107Y-Sulfide Derivative


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP2982.5-3.0M ammonium sulfate, 0.1M Tris
Crystal Properties
Matthews coefficientSolvent content
1.7730.59

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 35.003α = 90
b = 28.516β = 105.61
c = 62.696γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2015-05-21MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRF BEAMLINE BL19U10.97845SSRFBL19U1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.960.3896.98153.28914
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.91.949

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT1.960.38891445296.980.166740.163710.2274RANDOM16.078
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.420.19-0.14-0.34
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.377
r_dihedral_angle_4_deg18.896
r_dihedral_angle_3_deg15.213
r_dihedral_angle_1_deg5.594
r_long_range_B_refined4.899
r_long_range_B_other4.863
r_scangle_other3.513
r_mcangle_other2.331
r_mcangle_it2.327
r_scbond_it2.27
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.377
r_dihedral_angle_4_deg18.896
r_dihedral_angle_3_deg15.213
r_dihedral_angle_1_deg5.594
r_long_range_B_refined4.899
r_long_range_B_other4.863
r_scangle_other3.513
r_mcangle_other2.331
r_mcangle_it2.327
r_scbond_it2.27
r_scbond_other2.27
r_angle_refined_deg1.845
r_mcbond_it1.567
r_mcbond_other1.555
r_angle_other_deg1.069
r_chiral_restr0.126
r_bond_refined_d0.017
r_gen_planes_refined0.009
r_gen_planes_other0.005
r_bond_other_d0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1196
Nucleic Acid Atoms
Solvent Atoms56
Heterogen Atoms63

Software

Software
Software NamePurpose
REFMACrefinement
HKL-3000data reduction
HKL-3000data scaling
PHASERphasing