5Z1Y
mBjAMP1 structure
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H TOCSY | 2 mM WT peptides, 10 mM pH 6.0 sodium phosphate, 50 mM pH 6.0 sodium chloride, 10 % pH 6.0 D2O | 90% H2O/10% D2O | 50 mM | 6.0 | 1 Pa | 298.0 | Bruker AVANCE 600 |
2 | 2D 1H-1H NOESY | 2 mM WT peptides, 10 mM pH 6.0 sodium phosphate, 50 mM pH 6.0 sodium chloride, 10 % pH 6.0 D2O | 90% H2O/10% D2O | 50 mM | 6.0 | 1 Pa | 298.0 | Bruker AVANCE 600 |
3 | 2D DQF-COSY | 2 mM WT peptides, 10 mM pH 6.0 sodium phosphate, 50 mM pH 6.0 sodium chloride, 10 % pH 6.0 D2O | 90% H2O/10% D2O | 50 mM | 6.0 | 1 Pa | 298.0 | Bruker AVANCE 600 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | X-PLOR NIH |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
2 | structure calculation | CYANA | 2.1 | Guntert, Mumenthaler and Wuthrich |
3 | chemical shift assignment | MOLMOL | Koradi, Billeter and Wuthrich | |
4 | peak picking | NMRView | Johnson, One Moon Scientific |