X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION5.6291.151 M ammonium di-hydrogen phosphate, 0.1 M Tris-sodium pH 5.6, 10% glycerol
Crystal Properties
Matthews coefficientSolvent content
3.1360.76

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 86.106α = 90
b = 86.106β = 90
c = 182.167γ = 120
Symmetry
Space GroupP 31 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2015-11-16MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALBA BEAMLINE XALOC0.979ALBAXALOC

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.8547.0861000.2140.2250.99710.949.435279-369.534
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.853.0299.92.6681.05

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT2.85201788297599.580.19940.19750.233RANDOM81.165
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
2.21.12.2-7.14
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.536
r_dihedral_angle_3_deg16.265
r_dihedral_angle_4_deg11.908
r_mcangle_it6.776
r_dihedral_angle_1_deg4.932
r_mcbond_it4.415
r_mcbond_other4.413
r_angle_refined_deg1.546
r_angle_other_deg1.025
r_chiral_restr0.084
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.536
r_dihedral_angle_3_deg16.265
r_dihedral_angle_4_deg11.908
r_mcangle_it6.776
r_dihedral_angle_1_deg4.932
r_mcbond_it4.415
r_mcbond_other4.413
r_angle_refined_deg1.546
r_angle_other_deg1.025
r_chiral_restr0.084
r_bond_refined_d0.013
r_gen_planes_refined0.007
r_bond_other_d0.003
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2984
Nucleic Acid Atoms
Solvent Atoms1
Heterogen Atoms10

Software

Software
Software NamePurpose
XSCALEdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
XDSdata reduction
SHELXDEphasing