X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP8.52930.02 M L-Na-Glutamate; 0.02 M Alanine (racemic);0.02M Glycine; 0.02M Lysine HCl (racemic); 0.02M Serine (racemic);0.1 M tris Bicine buffer (pH 8.5); 20% v/v Ethylene glycol; 10 % w/v PEG 8000
Crystal Properties
Matthews coefficientSolvent content
2.550.89

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 77.98α = 90
b = 93.71β = 90
c = 52.6γ = 90
Symmetry
Space GroupP 21 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 2M2015-12-11MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I04-10.9282DiamondI04-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.0145.8799.80.09513.36.6263621-3

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT2.0145.8724966136199.880.206920.204630.24824RANDOM56.7
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-2.81-0.663.47
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.097
r_dihedral_angle_4_deg17.647
r_dihedral_angle_3_deg16.901
r_long_range_B_other11.064
r_long_range_B_refined11.057
r_dihedral_angle_1_deg9.753
r_scangle_other8.117
r_mcangle_other7.64
r_mcangle_it7.637
r_scbond_it5.403
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.097
r_dihedral_angle_4_deg17.647
r_dihedral_angle_3_deg16.901
r_long_range_B_other11.064
r_long_range_B_refined11.057
r_dihedral_angle_1_deg9.753
r_scangle_other8.117
r_mcangle_other7.64
r_mcangle_it7.637
r_scbond_it5.403
r_scbond_other5.401
r_mcbond_it5.343
r_mcbond_other5.321
r_angle_refined_deg1.917
r_angle_other_deg1.039
r_chiral_restr0.113
r_bond_refined_d0.017
r_gen_planes_refined0.01
r_bond_other_d0.002
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2467
Nucleic Acid Atoms
Solvent Atoms72
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
xia2data reduction
xia2data scaling
MOLREPphasing