X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP29322-30% (w/v) PEG 1450, 50 mM HEPES, 100 mM Zn(CH3COO)2
Crystal Properties
Matthews coefficientSolvent content
239

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 44.41α = 90
b = 50.53β = 90
c = 93.68γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 2M2011-03-16MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONELETTRA BEAMLINE 5.2R1.265ELETTRA5.2R

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.546.8494.20.06718.210323853-3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.51.5885.20.2516.29.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT3EHV1.546.8430674167193.70.157360.156090.18033RANDOM16.914
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.40.64-0.24
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.623
r_dihedral_angle_4_deg17.184
r_dihedral_angle_3_deg13.737
r_long_range_B_refined7.111
r_long_range_B_other6.92
r_dihedral_angle_1_deg6.254
r_scangle_other5.179
r_scbond_it3.386
r_scbond_other3.384
r_mcangle_it2.547
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.623
r_dihedral_angle_4_deg17.184
r_dihedral_angle_3_deg13.737
r_long_range_B_refined7.111
r_long_range_B_other6.92
r_dihedral_angle_1_deg6.254
r_scangle_other5.179
r_scbond_it3.386
r_scbond_other3.384
r_mcangle_it2.547
r_mcangle_other2.546
r_angle_refined_deg2.433
r_mcbond_it1.81
r_mcbond_other1.759
r_angle_other_deg1.363
r_chiral_restr0.173
r_bond_refined_d0.025
r_gen_planes_refined0.011
r_gen_planes_other0.002
r_bond_other_d0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1708
Nucleic Acid Atoms
Solvent Atoms216
Heterogen Atoms30

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
SCALAdata scaling
MOLREPphasing