X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2770.2 M MgCl2, 0.1 M HEPES, 20% PEG 6000, pH 7.5
Crystal Properties
Matthews coefficientSolvent content
2.3948.61

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 51.88α = 90
b = 110.12β = 90
c = 164.85γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 6M2015-05-08MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I240.97DiamondI24

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.9555.1299.60.0578.66.566360
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.95299.80.8421.86.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT1.9555.1266360344399.90.159370.157180.2012RANDOM29.706
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
3.48-1.97-1.51
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.872
r_dihedral_angle_4_deg14.87
r_dihedral_angle_3_deg14.449
r_sphericity_free11.69
r_rigid_bond_restr5.894
r_dihedral_angle_1_deg5.377
r_sphericity_bonded4.995
r_angle_refined_deg1.27
r_angle_other_deg1.15
r_chiral_restr0.089
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.872
r_dihedral_angle_4_deg14.87
r_dihedral_angle_3_deg14.449
r_sphericity_free11.69
r_rigid_bond_restr5.894
r_dihedral_angle_1_deg5.377
r_sphericity_bonded4.995
r_angle_refined_deg1.27
r_angle_other_deg1.15
r_chiral_restr0.089
r_bond_refined_d0.013
r_gen_planes_other0.011
r_gen_planes_refined0.008
r_bond_other_d0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_it
r_mcbond_other
r_mcangle_it
r_mcangle_other
r_scbond_it
r_scbond_other
r_scangle_it
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6792
Nucleic Acid Atoms
Solvent Atoms701
Heterogen Atoms131

Software

Software
Software NamePurpose
REFMACrefinement
xia2data reduction
xia2data scaling