5LXL
NMR structure of the N-terminal domain of the Bacteriophage T5 decoration protein pb10
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D HSQC | 1 mM [U-99% 13C; U-99% 15N] n77 | 90% H2O/10% D2O | 50 mM | 7.2 | 1 atm | 293 | Bruker DRX 600 |
2 | 3D TOCSY-NOESY | 1 mM [U-99% 13C; U-99% 15N] n77 | 90% H2O/10% D2O | 50 mM | 7.2 | 1 atm | 293 | Bruker DRX 700 |
3 | 3D HNHA | 1 mM [U-99% 13C; U-99% 15N] n77 | 90% H2O/10% D2O | 50 mM | 7.2 | 1 atm | 293 | Bruker DRX 700 |
4 | 3D CBCA(CO)NH | 1 mM [U-99% 13C; U-99% 15N] n77 | 90% H2O/10% D2O | 50 mM | 7.2 | 1 atm | 293 | Bruker DRX 700 |
5 | 3D HNCACB | 1 mM [U-99% 13C; U-99% 15N] n77 | 90% H2O/10% D2O | 50 mM | 7.2 | 1 atm | 293 | Bruker DRX 700 |
8 | 3D HNCO | 1 mM [U-99% 13C; U-99% 15N] n77 | 90% H2O/10% D2O | 50 mM | 7.2 | 1 atm | 293 | Bruker DRX 700 |
7 | 3D HN(CA)CO | 1 mM [U-99% 13C; U-99% 15N] n77 | 90% H2O/10% D2O | 50 mM | 7.2 | 1 atm | 293 | Bruker DRX 700 |
6 | 3D HBHA(CO)NH | 1 mM [U-99% 13C; U-99% 15N] n77 | 90% H2O/10% D2O | 50 mM | 7.2 | 1 atm | 293 | Bruker DRX 700 |
9 | 3D HN(CO)CA | 1 mM [U-99% 13C; U-99% 15N] n77 | 90% H2O/10% D2O | 50 mM | 7.2 | 1 atm | 293 | Bruker DRX 700 |
10 | 3D HN(CA)NNH | 1 mM [U-99% 13C; U-99% 15N] n77 | 90% H2O/10% D2O | 50 mM | 7.2 | 1 atm | 293 | Bruker DRX 700 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 600 |
2 | Bruker | DRX | 700 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | CNS |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | data analysis | CcpNmr Analysis | CCPN | |
2 | structure calculation | INCA | Savarin P., Zinn-Justin S., Gilquin B., 19,2001, J. Biomol NMR, pp. 49-62 | |
3 | chemical shift assignment | CcpNmr Analysis | CCPN | |
4 | peak picking | CcpNmr Analysis | CCPN | |
5 | refinement | CNS | Brunger, Adams, Clore, Gros, Nilges and Read |