Experiment: 5LSD

SOLUTION NMR

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	3D HNCA	0.1 mM [U-99% 13C; U-99% 15N] Nerve Growth Factor, 50 mM sodium phosphate, 1 mM EDTA	93% H2O/7% D2O	50 mM	7	1 atm	303	Bruker AVANCE 700
11	2D 1H-15N HSQC	0.1 mM [U-99% 13C; U-99% 15N] Nerve Growth Factor, 50 mM sodium phosphate, 1 mM EDTA	93% H2O/7% D2O	50 mM	7	1 atm	303	Bruker AVANCE 700
2	3D HNCO	0.1 mM [U-99% 13C; U-99% 15N] Nerve Growth Factor, 50 mM sodium phosphate, 1 mM EDTA	93% H2O/7% D2O	50 mM	7	1 atm	303	Bruker AVANCE 700
3	3D HNCACB	0.1 mM [U-99% 13C; U-99% 15N] Nerve Growth Factor, 50 mM sodium phosphate, 1 mM EDTA	93% H2O/7% D2O	50 mM	7	1 atm	303	Bruker AVANCE 700
4	3D 1H-15N NOESY	0.1 mM [U-99% 13C; U-99% 15N] Nerve Growth Factor, 50 mM sodium phosphate, 1 mM EDTA	93% H2O/7% D2O	50 mM	7	1 atm	303	Bruker AVANCE 700
5	3D 1H-15N NOESY	0.1 mM [U-99% 13C; U-99% 15N] Nerve Growth Factor, 50 mM sodium phosphate, 1 mM EDTA	93% H2O/7% D2O	50 mM	7	1 atm	308	Varian INOVA 800
12	2D 1H-13C HSQC aliphatic	0.1 mM [U-99% 13C; U-99% 15N] Nerve Growth Factor, 50 mM sodium phosphate, 1 mM EDTA	93% H2O/7% D2O	50 mM	7	1 atm	303	Varian INOVA 800
6	3D 1H-13C NOESY aliphatic	0.1 mM [U-99% 13C; U-99% 15N] Nerve Growth Factor, 50 mM sodium phosphate, 1 mM EDTA	93% H2O/7% D2O	50 mM	7	1 atm	303	Varian INOVA 800
7	3D 1H-13C NOESY aliphatic	0.1 mM [U-99% 13C; U-99% 15N] Nerve Growth Factor, 50 mM sodium phosphate, 1 mM EDTA	93% H2O/7% D2O	50 mM	7	1 atm	308	Bruker AVANCE 800
13	2D 1H-13C HSQC aliphatic	0.1 mM [U-99% 13C; U-99% 15N] Nerve Growth Factor, 50 mM sodium phosphate, 1 mM EDTA	93% H2O/7% D2O	50 mM	7	1 atm	308	Bruker AVANCE 800
8	3D CBCA(CO)NH	0.1 mM [U-99% 13C; U-99% 15N] Nerve Growth Factor, 50 mM sodium phosphate, 1 mM EDTA	93% H2O/7% D2O	50 mM	7	1 atm	303	Bruker AVANCE 700
9	3D HCCH-TOCSY	0.1 mM [U-99% 13C; U-99% 15N] Nerve Growth Factor, 50 mM sodium phosphate, 1 mM EDTA	93% H2O/7% D2O	50 mM	7	1 atm	303	Varian INOVA 800
10	2D 1H-13C HSQC aromatic	0.1 mM [U-99% 13C; U-99% 15N] Nerve Growth Factor, 50 mM sodium phosphate, 1 mM EDTA	93% H2O/7% D2O	50 mM	7	1 atm	303	Varian INOVA 800
14	3D 1H-13C NOESY aromatic	0.1 mM [U-99% 13C; U-99% 15N] Nerve Growth Factor, 50 mM sodium phosphate, 1 mM EDTA	93% H2O/7% D2O	50 mM	7	1 atm	303	Varian INOVA 800

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Varian	INOVA	600
2	Varian	INOVA	800
3	Bruker	AVANCE	600
4	Bruker	AVANCE	700
5	Bruker	AVANCE	800

NMR Refinement
Method	Details	Software
molecular dynamics		ARIA

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	200
Conformers Submitted Total Number	20
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	processing	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
2	processing	NMRDraw		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
3	data analysis	CARA		Keller and Wuthrich
4	peak picking	CARA		Keller and Wuthrich
5	refinement	ARIA	2.3.2	Rieping W., Habeck M., Bardiaux B., Bernard A., Malliavin T.E., Nilges M. (2007) ARIA2: automated NOE assignment and data integration in NMR structure calculation Bioinformatics 23:381-382
6	structure calculation	ARIA	2.3.2	Rieping W., Habeck M., Bardiaux B., Bernard A., Malliavin T.E., Nilges M. (2007) ARIA2: automated NOE assignment and data integration in NMR structure calculation Bioinformatics 23:381-382

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.