5JYH
Solution Structure of Hge36: Scorpine-like Peptide from Hadrurus Gertschi
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 3.0 mM HgeD | 95% H2O/5% D2O | 0 | 3.5 | 0.98 atm | 298 | Bruker AVANCE III 700 |
2 | 2D 1H-1H TOCSY | 3.0 mM HgeD | 95% H2O/5% D2O | 0 | 3.5 | 0.98 atm | 298 | Varian INOVA 500 |
3 | 2D DQF-COSY | 3.0 mM HgeD | 95% H2O/5% D2O | 0 | 3.5 | 0.98 atm | 298 | Varian INOVA 500 |
4 | 2D 1H-1H NOESY | 3.0 mM HgeD | 95% H2O/5% D2O | 0 | 3.5 | 0.98 atm | 298 | Varian INOVA 500 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE III | 700 |
2 | Varian | INOVA | 500 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
molecular dynamics | chiral restrains added | Amber |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 400 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | Amber | 9.0 | Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman |
2 | structure calculation | CYANA | 2.1 | Guntert, Mumenthaler and Wuthrich |
3 | chemical shift assignment | CARA | 1.8 | Keller and Wuthrich |
4 | peak picking | CARA | 1.8 | Keller and Wuthrich |