Experiment: 5ITM

X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	7.5	295	0.1 M Tris-Cl, pH 7.5, 40% PEG 400

Crystal Properties
Matthews coefficient	Solvent content
1.8	31.62

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 49.333	α = 90
b = 49.333	β = 90
c = 82.466	γ = 120

Symmetry
Space Group	P 31

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	123	CCD	ADSC QUANTUM 315r		2015-07-25	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	NSRRC BEAMLINE BL13C1	0.9760	NSRRC	BL13C1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.4	30	99.2	30.6	4.5		43748

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.4	1.45

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION		THROUGHOUT	1.4	27.49	41484	2228	99.15	0.1696	0.168	0.1974	RANDOM	22.409

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
2.61			2.61		-5.23

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	42.772
r_dihedral_angle_3_deg	14.736
r_dihedral_angle_4_deg	12.47
r_dihedral_angle_1_deg	7.668
r_angle_other_deg	3.092
r_angle_refined_deg	2.301
r_mcangle_it	2.088
r_mcbond_it	1.405
r_mcbond_other	1.405
r_chiral_restr	0.133

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	42.772
r_dihedral_angle_3_deg	14.736
r_dihedral_angle_4_deg	12.47
r_dihedral_angle_1_deg	7.668
r_angle_other_deg	3.092
r_angle_refined_deg	2.301
r_mcangle_it	2.088
r_mcbond_it	1.405
r_mcbond_other	1.405
r_chiral_restr	0.133
r_bond_refined_d	0.023
r_bond_other_d	0.022
r_gen_planes_refined	0.017
r_gen_planes_other	0.015

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2255
Nucleic Acid Atoms
Solvent Atoms	311
Heterogen Atoms

Software

Software
Software Name	Purpose
SCALEPACK	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction
HKL-2000	data reduction
PHASER	phasing

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.