5IEB

Solution structure of SdrG from Sphingomonas melonis Fr1


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D 1H-13C NOESY aromatic1 mM [U-99% 13C; U-99% 15N] SdrG, 10 mM NaPO4, 50 mM NaCl90% H2O/10% D2O50 mM6.5AMBIENT Pa303Bruker AVANCE II 900
23D 1H-13C NOESY aliphatic1 mM [U-99% 13C; U-99% 15N] SdrG, 10 mM NaPO4, 50 mM NaCl90% H2O/10% D2O50 mM6.5AMBIENT Pa303Bruker AVANCE II 900
33D 1H-15N NOESY1 mM [U-99% 13C; U-99% 15N] SdrG, 10 mM NaPO4, 50 mM NaCl90% H2O/10% D2O50 mM6.5AMBIENT Pa303Bruker AVANCE II 900
43D HNCO1 mM [U-99% 13C; U-99% 15N] SdrG, 10 mM NaPO4, 50 mM NaCl90% H2O/10% D2O50 mM6.5AMBIENT Pa303Bruker AVANCE III 500
53D HNCACB1 mM [U-99% 13C; U-99% 15N] SdrG, 10 mM NaPO4, 50 mM NaCl90% H2O/10% D2O50 mM6.5AMBIENT Pa303Bruker AVANCE III 500
63D CBCA(CO)NH1 mM [U-99% 13C; U-99% 15N] SdrG, 10 mM NaPO4, 50 mM NaCl90% H2O/10% D2O50 mM6.5AMBIENT Pa303Bruker AVANCE III 500
103D H(CCO)NH1 mM [U-99% 13C; U-99% 15N] SdrG, 10 mM NaPO4, 50 mM NaCl90% H2O/10% D2O50 mM6.5AMBIENT Pa303Bruker AVANCE III 500
93D C(CO)NH1 mM [U-99% 13C; U-99% 15N] SdrG, 10 mM NaPO4, 50 mM NaCl90% H2O/10% D2O50 mM6.5AMBIENT Pa303Bruker AVANCE III 500
83D HCCH-TOCSY1 mM [U-99% 13C; U-99% 15N] SdrG, 10 mM NaPO4, 50 mM NaCl90% H2O/10% D2O50 mM6.5AMBIENT Pa303Bruker AVANCE III 500
111D H1 mM [U-99% 13C; U-99% 15N] SdrG, 10 mM NaPO4, 50 mM NaCl90% H2O/10% D2O50 mM6.5AMBIENT Pa303Bruker AVANCE III 500
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE III500
2BrukerAVANCE II900
NMR Refinement
MethodDetailsSoftware
simulated annealingAmber
NMR Ensemble Information
Conformer Selection Criteriastructures with the least restraint violations
Conformers Calculated Total Number30
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1structure calculationCYANA3.96P. Gunther
2refinementAmber12Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman
3collectionTopSpin3.2Bruker Biospin
4data analysisCARAKeller and Wuthrich