5HQF

DNA duplex containing a ribonolactone lesion


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D NOESY0.85 mM oligonucleotide100% D2O120 mM61 bar283Bruker AvanceIII 500
22D 1H-1H TOCSY0.85 mM oligonucleotide100% D2O120 mM61 bar283Bruker AvanceIII 500
32D DQF-COSY0.85 mM oligonucleotide100% D2O120 mM61 bar283Bruker AvanceIII 500
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAvanceIII500
NMR Refinement
MethodDetailsSoftware
simulated annealingAmber
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number10
Conformers Submitted Total Number10
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1chemical shift assignmentCcpNmr AnalysisCCPN
2structure calculationAmberCase, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman