X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4.62930.2 M Citrate Sodium PH4.6, 1.6 M Sodium phosphate monobasic, 0.4 M Potassium phosphate dibasic
Crystal Properties
Matthews coefficientSolvent content
2.2244.58

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 33.512α = 90
b = 86.601β = 92.15
c = 86.762γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDRIGAKU2016-09-17MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRF BEAMLINE BL17U0.987SSRFBL17U

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.25099.615.763.324711
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.22.2499.60.5642.563.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT3S2X2.243.3423435125698.250.175680.172890.22803RANDOM32.427
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.330.40.07-0.41
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.562
r_dihedral_angle_4_deg19.432
r_dihedral_angle_3_deg15.393
r_long_range_B_refined6.826
r_long_range_B_other6.806
r_dihedral_angle_1_deg6.351
r_scangle_other5.816
r_scbond_it3.903
r_scbond_other3.902
r_mcangle_it3.507
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.562
r_dihedral_angle_4_deg19.432
r_dihedral_angle_3_deg15.393
r_long_range_B_refined6.826
r_long_range_B_other6.806
r_dihedral_angle_1_deg6.351
r_scangle_other5.816
r_scbond_it3.903
r_scbond_other3.902
r_mcangle_it3.507
r_mcangle_other3.506
r_mcbond_it2.45
r_mcbond_other2.448
r_angle_refined_deg1.849
r_angle_other_deg0.909
r_chiral_restr0.109
r_bond_refined_d0.017
r_gen_planes_refined0.008
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3858
Nucleic Acid Atoms
Solvent Atoms107
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
HKL-3000data reduction
HKL-3000data scaling
MOLREPphasing